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Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction

Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction

http://www.wikidata.org/entity/Q33262933

about

Semantic similarity in biomedical ontologies Finding new genes for non-syndromic hearing loss through an in silico prioritization study ProLoc-GO: utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization Metrics for GO based protein semantic similarity: a systematic evaluation A relation based measure of semantic similarity for Gene Ontology annotations.Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile data.MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction.Amino acid classification based spectrum kernel fusion for protein subnuclear localization.An improved method for scoring protein-protein interactions using semantic similarity within the gene ontology.PNAC: a protein nucleolar association classifier.Gene ontology based transfer learning for protein subcellular localization Exact score distribution computation for ontological similarity searches.Going from where to why--interpretable prediction of protein subcellular localization.An ensemble classifier for eukaryotic protein subcellular location prediction using gene ontology categories and amino acid hydrophobicity An N-myristoylated globin with a redox-sensing function that regulates the defecation cycle in Caenorhabditis elegans.Prediction of nuclear proteins using nuclear translocation signals proposed by probabilistic latent semantic indexing.Molecular and functional characterization of a Trypanosoma cruzi nuclear adenylate kinase isoform An ensemble method for predicting subnuclear localizations from primary protein structures.A weighted multipath measurement based on gene ontology for estimating gene products similarity.Comparative proteomics analysis of proteins expressed in the I-1 and I-2 internodes of strawberry stolons HybridGO-Loc: mining hybrid features on gene ontology for predicting subcellular localization of multi-location proteins An improved method for functional similarity analysis of genes based on Gene Ontology.Utility of mass spectrometry for proteome analysis: part II. Ion-activation methods, statistics, bioinformatics and annotation.Prediction of functional class of proteins and peptides irrespective of sequence homology by support vector machines.Tocotrienols induce endoplasmic reticulum stress and apoptosis in cervical cancer cells.Recent progress in predicting protein sub-subcellular locations.GOSemSim: an R package for measuring semantic similarity among GO terms and gene products.Gene Ontology semantic similarity tools: survey on features and challenges for biological knowledge discovery.WegoLoc: accurate prediction of protein subcellular localization using weighted Gene Ontology terms.Screening and identification of resistance related proteins from apple leaves inoculated with Marssonina coronaria (EII. & J. J. Davis).FARNA: knowledgebase of inferred functions of non-coding RNA transcripts.Overexpressed TPX2 causes ectopic formation of microtubular arrays in the nuclei of acentrosomal plant cells.Identification of essential proteins from weighted protein-protein interaction networks.Using over-represented tetrapeptides to predict protein submitochondria locations.C-terminal extension of calmodulin-like 3 protein from Oryza sativa L.: interaction with a high mobility group target protein.Recent advances in methods of lexical semantic relatedness – a survey

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Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction

http://www.wikidata.org/entity/Q33262933

description

2006 nî lūn-bûn

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2006 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

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2006年の論文

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Assessing protein similarity w ...... uclear localization prediction

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Assessing protein similarity w ...... uclear localization prediction

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Zhengdeng Lei

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P2860

Prediction of functional modules based on comparative genome analysis and Gene Ontology application

PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria

Automatic annotation of protein motif function with Gene Ontology terms

Nuclear localization is required for Dishevelled function in Wnt/beta-catenin signaling

Protein subcellular localization prediction for Gram-negative bacteria using amino acid subalphabets and a combination of multiple support vector machines.

pSLIP: SVM based protein subcellular localization prediction using multiple physicochemical properties.

An SVM-based system for predicting protein subnuclear localizations.

The Gene Ontology (GO) database and informatics resource

PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization

Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation

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