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Posttranscriptional expression regulation: what determines translation rates?

Posttranscriptional expression regulation: what determines translation rates?

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Advances in analyzing RNA diversity in eukaryotic transcriptomes: peering through the Omics lens Identifying Aspects of the Post-Transcriptional Program Governing the Proteome of the Green Alga Micromonas pusilla A fluorimetry-based ssYFP secretion assay to monitor vasopressin-induced exocytosis in LLC-PK1 cells expressing aquaporin-2.Determinants of protein abundance and translation efficiency in S. cerevisiae Detecting translational regulation by change point analysis of ribosome profiling data sets Leveraging the complementary nature of RNA-Seq and shotgun proteomics data.Decoding Cellular Dynamics in Epidermal Growth Factor Signaling Using a New Pathway-Based Integration Approach for Proteomics and Transcriptomics Data.Balanced codon usage optimizes eukaryotic translational efficiency.Upstream sequence elements direct post-transcriptional regulation of gene expression under stress conditions in yeast.Alternative splicing studies of the reactive oxygen species gene network in Populus reveal two isoforms of high-isoelectric-point superoxide dismutase.mRNA stability and the unfolding of gene expression in the long-period yeast metabolic cycle.Low contents of carbon and nitrogen in highly abundant proteins: evidence of selection for the economy of atomic composition.Combined analysis of transcriptome and proteome data as a tool for the identification of candidate biomarkers in renal cell carcinoma.Comparison of proteomic and transcriptomic profiles in the bronchial airway epithelium of current and never smokers.BioQuali Cytoscape plugin: analysing the global consistency of regulatory networks Production and characterisation of monoclonal antibodies against RAI3 and its expression in human breast cancer.Clustering of codons with rare cognate tRNAs in human genes suggests an extra level of expression regulation.Transcriptome and proteome exploration to model translation efficiency and protein stability in Lactococcus lactis.Analysis of Light- and Carbon-Specific Transcriptomes Implicates a Class of G-Protein-Coupled Receptors in Cellulose Sensing.Evolutionary systems biology of amino acid biosynthetic cost in yeast.Cloning and functional characterization of three branch point oxidosqualene cyclases from Withania somnifera (L.) dunal.Analysis and prediction of translation rate based on sequence and functional features of the mRNA.A quantitative comparison of cell-type-specific microarray gene expression profiling methods in the mouse brain.Codon usage variability determines the correlation between proteome and transcriptome fold changes.Global signatures of protein and mRNA expression levels.GAP promoter library for fine-tuning of gene expression in Pichia pastoris.Kinome profiling reveals breast cancer heterogeneity and identifies targeted therapeutic opportunities for triple negative breast cancer The dynamics of supply and demand in mRNA translation.How molecular competition influences fluxes in gene expression networks.Correlation of gene expression and protein production rate - a system wide study Sequence signatures and mRNA concentration can explain two-thirds of protein abundance variation in a human cell line CBDB: the codon bias database.Pleckstrin homology domain leucine-rich repeat protein phosphatases set the amplitude of receptor tyrosine kinase output.Nonsense-mediated decay targets have multiple sequence-related features that can inhibit translation Ribosome traffic on mRNAs maps to gene ontology: genome-wide quantification of translation initiation rates and polysome size regulation.Dam methylation participates in the regulation of PmrA/PmrB and RcsC/RcsD/RcsB two component regulatory systems in Salmonella enterica serovar Enteritidis.Extensive mass spectrometry-based analysis of the fission yeast proteome: the Schizosaccharomyces pombe PeptideAtlas.Role of mRNA stability during bacterial adaptation A mouse M-opsin monochromat: retinal cone photoreceptors have increased M-opsin expression when S-opsin is knocked out Quantitative time-course profiling of parasite and host cell proteins in the human malaria parasite Plasmodium falciparum.

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Posttranscriptional expression regulation: what determines translation rates?

http://www.wikidata.org/entity/Q33279809

description

2007 nî lūn-bûn

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2007 թուականի Մարտին հրատարակուած գիտական յօդուած

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2007 թվականի մարտին հրատարակված գիտական հոդված

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2007年の論文

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2007年学术文章

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2007年学术文章

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2007年学术文章

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2007年学术文章

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2007年学术文章

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2007年學術文章

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Posttranscriptional expression regulation: what determines translation rates?

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JOURNAL.PCBI.0030057

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PLOS Computational Biology

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Posttranscriptional expression regulation: what determines translation rates?

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Andreas Beyer

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Jürgen J Heinisch

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Regina Brockmann

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Thomas Wilhelm

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P2860

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

Solving the riddle of codon usage preferences: a test for translational selection

Quantification of protein half-lives in the budding yeast proteome

Comparing protein abundance and mRNA expression levels on a genomic scale

Noise minimization in eukaryotic gene expression

Global analysis of protein expression in yeast

Genomic expression programs in the response of yeast cells to environmental changes

Decapping and decay of messenger RNA occur in cytoplasmic processing bodies

ERG10 from Saccharomyces cerevisiae encodes acetoacetyl-CoA thiolase.

Ser3p (Yer081wp) and Ser33p (Yil074cp) are phosphoglycerate dehydrogenases in Saccharomyces cerevisiae.

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10.1371/JOURNAL.PCBI.0030057

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17381238

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