DiRE: identifying distant regulatory elements of co-expressed genes.
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Defining an EPOR- regulated transcriptome for primary progenitors, including Tnfr-sf13c as a novel mediator of EPO- dependent erythroblast formationInvestigating regulatory signatures of human autophagy related gene 5 (ATG5) through functional in silico analysisTNF-insulin crosstalk at the transcription factor GATA6 is revealed by a model that links signaling and transcriptomic data tensors.Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data.Identification of high-copper-responsive target pathways in Atp7b knockout mouse liver by GSEA on microarray data sets.Identifying regulatory elements in eukaryotic genomes.DoOPSearch: a web-based tool for finding and analysing common conserved motifs in the promoter regions of different chordate and plant genes.Meta-coexpression conservation analysis of microarray data: a "subset" approach provides insight into brain-derived neurotrophic factor regulation.A computational evaluation of over-representation of regulatory motifs in the promoter regions of differentially expressed genes.A systems approach to mapping transcriptional networks controlling surfactant homeostasis.Prelamin A accumulation and stress conditions induce impaired Oct-1 activity and autophagy in prematurely aged human mesenchymal stem cellAssessing computational methods of cis-regulatory module prediction.A high protein diet during pregnancy affects hepatic gene expression of energy sensing pathways along ontogenesis in a porcine model.Twist1 directly regulates genes that promote cell proliferation and migration in developing heart valvesGenome dynamics of the human embryonic kidney 293 lineage in response to cell biology manipulationsIdentification of key pathways and transcription factors related to Parkinson disease in genome wide.Strain-specific activation of the NF-kappaB pathway by GRA15, a novel Toxoplasma gondii dense granule protein.Genome-wide prediction and analysis of human tissue-selective genes using microarray expression dataGenetic basis for phenotypic differences between different Toxoplasma gondii type I strainsTranscriptional analysis of murine macrophages infected with different Toxoplasma strains identifies novel regulation of host signaling pathwaysA Notch-dependent transcriptional hierarchy promotes mesenchymal transdifferentiation in the cardiac cushion.Comprehensive identification of essential pathways and transcription factors related to epilepsy by gene set enrichment analysis on microarray datasets.iRegulon: from a gene list to a gene regulatory network using large motif and track collections.Identification and computational analysis of gene regulatory elements.The indole-3-carbinol cyclic tetrameric derivative CTet inhibits cell proliferation via overexpression of p21/CDKN1A in both estrogen receptor-positive and triple-negative breast cancer cell lines.Gene set enrichment analysis of pathways and transcription factors associated with diabetic retinopathy using a microarray dataset.An Integrative Approach for Mapping Differentially Expressed Genes and Network Components Using Novel Parameters to Elucidate Key Regulatory Genes in Colorectal Cancer.The stromal genome heterogeneity between breast and prostate tumors revealed by a comparative transcriptomic analysis.Leukocyte function-associated antigen-1/intercellular adhesion molecule-1 interaction induces a novel genetic signature resulting in T-cells refractory to transforming growth factor-β signalingA comprehensive transcriptomic analysis of differentiating embryonic stem cells in response to the overexpression of Mesogenin 1Identification of Identical Transcript Changes in Liver and Whole Blood during Acetaminophen Toxicity.Evidence that Igf2 down-regulation in postnatal tissues and up-regulation in malignancies is driven by transcription factor E2f3Sp1 transcription factor interaction with accumulated prelamin a impairs adipose lineage differentiation in human mesenchymal stem cells: essential role of sp1 in the integrity of lipid vesicles.Dose-responsive gene expression in suberoylanilide hydroxamic acid-treated resting CD4+ T cells.Distinct NF-κB and MAPK Activation Thresholds Uncouple Steady-State Microbe Sensing from Anti-pathogen Inflammatory Responses.Limited but durable changes to cellular gene expression in a model of latent adenovirus infection are reflected in childhood leukemic cell lines.E2f8 mediates tumor suppression in postnatal liver development.Identification of cis-regulatory modules in promoters of human genes exploiting mutual positioning of transcription factorsIdentification of targets of miRNA-221 and miRNA-222 in fulvestrant-resistant breast cancer.Resuscitation-induced intestinal edema and related dysfunction: state of the science.
P2860
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P2860
DiRE: identifying distant regulatory elements of co-expressed genes.
description
2008 nî lūn-bûn
@nan
2008 թուականի Մայիսին հրատարակուած գիտական յօդուած
@hyw
2008 թվականի մայիսին հրատարակված գիտական հոդված
@hy
2008年の論文
@ja
2008年論文
@yue
2008年論文
@zh-hant
2008年論文
@zh-hk
2008年論文
@zh-mo
2008年論文
@zh-tw
2008年论文
@wuu
name
DiRE: identifying distant regulatory elements of co-expressed genes.
@ast
DiRE: identifying distant regulatory elements of co-expressed genes.
@en
DiRE: identifying distant regulatory elements of co-expressed genes.
@nl
type
label
DiRE: identifying distant regulatory elements of co-expressed genes.
@ast
DiRE: identifying distant regulatory elements of co-expressed genes.
@en
DiRE: identifying distant regulatory elements of co-expressed genes.
@nl
prefLabel
DiRE: identifying distant regulatory elements of co-expressed genes.
@ast
DiRE: identifying distant regulatory elements of co-expressed genes.
@en
DiRE: identifying distant regulatory elements of co-expressed genes.
@nl
P2860
P356
P1476
DiRE: identifying distant regulatory elements of co-expressed genes.
@en
P2093
Ivan Ovcharenko
P2860
P304
P356
10.1093/NAR/GKN300
P407
P433
Web Server issue
P50
P577
2008-05-17T00:00:00Z