An automated phylogenetic tree-based small subunit rRNA taxonomy and alignment pipeline (STAP).
about
Inferring the Tree of Life: chopping a phylogenomic problem down to size?Stalking the fourth domain in metagenomic data: searching for, discovering, and interpreting novel, deep branches in marker gene phylogenetic treesThreatened corals provide underexplored microbial habitats.Introducing W.A.T.E.R.S.: a workflow for the alignment, taxonomy, and ecology of ribosomal sequences.VITCOMIC: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences.Phylometrics: a pipeline for inferring phylogenetic trees from a sequence relationship network perspective.PhylOTU: a high-throughput procedure quantifies microbial community diversity and resolves novel taxa from metagenomic data.The phylogenetic diversity of metagenomes.Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain.Determining the culturability of the rumen bacterial microbiome.High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences.Phylogenetic affiliation of SSU rRNA genes generated by massively parallel sequencing: new insights into the freshwater protist diversitySystematic identification of gene families for use as "markers" for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups.Gut Lactobacillales are associated with higher CD4 and less microbial translocation during HIV infection.Rumen methanogenic genotypes differ in abundance according to host residual feed intake phenotype and diet typeTaxonomic resolutions based on 18S rRNA genes: a case study of subclass copepoda.Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences.Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment.From genus to phylum: large-subunit and internal transcribed spacer rRNA operon regions show similar classification accuracies influenced by database compositionPUmPER: phylogenies updated perpetually.A taxonomic signature of obesity in the microbiome? Getting to the guts of the matterViCTree: An automated framework for taxonomic classification from protein sequences.Building the Coleoptera tree-of-life for >8000 species: composition of public DNA data and fit with Linnaean classification
P2860
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P2860
An automated phylogenetic tree-based small subunit rRNA taxonomy and alignment pipeline (STAP).
description
2008 nî lūn-bûn
@nan
2008 թուականի Յուլիսին հրատարակուած գիտական յօդուած
@hyw
2008 թվականի հուլիսին հրատարակված գիտական հոդված
@hy
2008年の論文
@ja
2008年学术文章
@wuu
2008年学术文章
@zh-cn
2008年学术文章
@zh-hans
2008年学术文章
@zh-my
2008年学术文章
@zh-sg
2008年學術文章
@yue
name
An automated phylogenetic tree ...... and alignment pipeline (STAP).
@ast
An automated phylogenetic tree ...... and alignment pipeline (STAP).
@en
type
label
An automated phylogenetic tree ...... and alignment pipeline (STAP).
@ast
An automated phylogenetic tree ...... and alignment pipeline (STAP).
@en
prefLabel
An automated phylogenetic tree ...... and alignment pipeline (STAP).
@ast
An automated phylogenetic tree ...... and alignment pipeline (STAP).
@en
P2860
P1433
P1476
An automated phylogenetic tree ...... and alignment pipeline (STAP).
@en
P2093
Amber Hartman
Dongying Wu
P2860
P356
10.1371/JOURNAL.PONE.0002566
P407
P577
2008-07-02T00:00:00Z