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SoyTEdb: a comprehensive database of transposable elements in the soybean genome

SoyTEdb: a comprehensive database of transposable elements in the soybean genome

http://www.wikidata.org/entity/Q33531930

about

Recent achievement in gene cloning and functional genomics in soybean Structural characterization of copia-type retrotransposons leads to insights into the marker development in a biofuel crop, Jatropha curcas L T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data A fluorescence in situ hybridization system for karyotyping soybean SFGD: a comprehensive platform for mining functional information from soybean transcriptome data and its use in identifying acyl-lipid metabolism pathways Draft genome sequence of adzuki bean, Vigna angularis.GrTEdb: the first web-based database of transposable elements in cotton (Gossypium raimondii).Comparative genomic analysis reveals multiple long terminal repeats, lineage-specific amplification, and frequent interelement recombination for Cassandra retrotransposon in pear (Pyrus bretschneideri Rehd.).Annotation and sequence diversity of transposable elements in common bean (Phaseolus vulgaris).Rapid genotyping of soybean cultivars using high throughput sequencing.Survey of sugar beet (Beta vulgaris L.) hAT transposons and MITE-like hATpin derivatives.MASiVEdb: the Sirevirus Plant Retrotransposon Database.Structural variants in the soybean genome localize to clusters of biotic stress-response genes.Profiling of extensively diversified plant LINEs reveals distinct plant-specific subclades.The mitochondrial genome of soybean reveals complex genome structures and gene evolution at intercellular and phylogenetic levels.Genome-wide expression analysis of soybean MADS genes showing potential function in the seed development.TARE1, a mutated Copia-like LTR retrotransposon followed by recent massive amplification in tomato.Scanning of transposable elements and analyzing expression of transposase genes of sweet potato [Ipomoea batatas].Analysis of BAC-end sequences in common bean (Phaseolus vulgaris L.) towards the development and characterization of long motifs SSRs.RiTE database: a resource database for genus-wide rice genomics and evolutionary biology.The Glycine max cv. Enrei Genome for Improvement of Japanese Soybean Cultivars.Large homogeneous genome regions (isochores) in soybean [glycine max (L.) merr].Highly distinct chromosomal structures in cowpea (Vigna unguiculata), as revealed by molecular cytogenetic analysis.A Comparative Epigenomic Analysis of Polyploidy-Derived Genes in Soybean and Common Bean.Genome-wide comparative analysis of DNA methylation between soybean cytoplasmic male-sterile line NJCMS5A and its maintainer NJCMS5B.The transcriptomic signature of developing soybean seeds reveals the genetic basis of seed trait adaptation during domestication.Divergent cytosine DNA methylation patterns in single-cell, soybean root hairs.Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.Dynamic Changes of Genome-Wide DNA Methylation during Soybean Seed Development.Genome-wide characterization of nonreference transposons reveals evolutionary propensities of transposons in soybean.Identification of high-quality single-nucleotide polymorphisms in Glycine latifolia using a heterologous reference genome sequence.Similarity between soybean and Arabidopsis seed methylomes and loss of non-CG methylation does not affect seed development.Characterization of new transposable element sub-families from white clover (Trifolium repens) using PCR amplification.Water deficit and aluminum interactive effects on generation of reactive oxygen species and responses of antioxidative enzymes in the seedlings of two rice cultivars differing in stress tolerance.Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes.The diversification and activity of hAT transposons in Musa genomes.The long intergenic non-coding RNA (lincRNA) landscape of the soybean genome.Development of a high-density linkage map and chromosome segment substitution lines for Japanese soybean cultivar Enrei.A Reference Viral Database (RVDB) To Enhance Bioinformatics Analysis of High-Throughput Sequencing for Novel Virus Detection.Shifts in the evolutionary rate and intensity of purifying selection between two Brassica genomes revealed by analyses of orthologous transposons and relics of a whole genome triplication.

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SoyTEdb: a comprehensive database of transposable elements in the soybean genome

http://www.wikidata.org/entity/Q33531930

description

2010 nî lūn-bûn

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2010 թուականի Փետրուարին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի փետրվարին հրատարակված գիտական հոդված

@hy

2010年の論文

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2010年論文

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2010年論文

@zh-hant

2010年論文

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2010年論文

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2010年論文

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2010年论文

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name

SoyTEdb: a comprehensive database of transposable elements in the soybean genome

@ast

SoyTEdb: a comprehensive database of transposable elements in the soybean genome

@en

SoyTEdb: a comprehensive database of transposable elements in the soybean genome.

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type

label

SoyTEdb: a comprehensive database of transposable elements in the soybean genome

@ast

SoyTEdb: a comprehensive database of transposable elements in the soybean genome

@en

SoyTEdb: a comprehensive database of transposable elements in the soybean genome.

@nl

prefLabel

SoyTEdb: a comprehensive database of transposable elements in the soybean genome

@ast

SoyTEdb: a comprehensive database of transposable elements in the soybean genome

@en

SoyTEdb: a comprehensive database of transposable elements in the soybean genome.

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SoyTEdb: a comprehensive database of transposable elements in the soybean genome

@en

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Jianchang Du

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Jianxin Ma

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Randy C Shoemaker

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Rex T Nelson

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Zhixi Tian

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P2860

Genome sequence of the palaeopolyploid soybean

The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants

RetrOryza: a database of the rice LTR-retrotransposons

Diaspora, a large family of Ty3-gypsy retrotransposons in Glycine max, is an envelope-less member of an endogenous plant retrovirus lineage

Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize

Repbase Update, a database of eukaryotic repetitive elements

A unified classification system for eukaryotic transposable elements

The map-based sequence of the rice genome

Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome

SIRE-1, a copia/Ty1-like retroelement from soybean, encodes a retroviral envelope-like protein.

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