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Ensembl Genomes: extending Ensembl across the taxonomic space

Ensembl Genomes: extending Ensembl across the taxonomic space

http://www.wikidata.org/entity/Q33600852

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Ensembl variation resources A universal trend among proteomes indicates an oily last common ancestor OMA 2011: orthology inference among 1000 complete genomes PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions TIARA: a database for accurate analysis of multiple personal genomes based on cross-technology starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data The Mouse Genome Database (MGD): premier model organism resource for mammalian genomics and genetics The Pfam protein families database The IntAct molecular interaction database in 2012 The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources Unlimited Thirst for Genome Sequencing, Data Interpretation, and Database Usage in Genomic Era: The Road towards Fast-Track Crop Plant Improvement Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions Annotate-it: a Swiss-knife approach to annotation, analysis and interpretation of single nucleotide variation in human disease Comparative genomics of eukaryotic small nucleolar RNAs reveals deep evolutionary ancestry amidst ongoing intragenomic mobility Potential role of multiple carbon fixation pathways during lipid accumulation in Phaeodactylum tricornutum RNAcentral: A vision for an international database of RNA sequences Gramene database in 2010: updates and extensions The European Bioinformatics Institute's data resources NMR structure of lipoprotein YxeF from Bacillus subtilis reveals a calycin fold and distant homology with the lipocalin Blc from Escherichia coli.Protein Bioinformatics Databases and Resources.Annotating genes and genomes with DNA sequences extracted from biomedical articles.Large-scale event extraction from literature with multi-level gene normalization.Improved method for prioritization of disease associated lncRNAs based on ceRNA theory and functional genomics data.A database and API for variation, dense genotyping and resequencing data.A method for increasing expressivity of Gene Ontology annotations using a compositional approach.A Ruby API to query the Ensembl database for genomic features Rice-Map: a new-generation rice genome browser.Bio::Homology::InterologWalk--a Perl module to build putative protein-protein interaction networks through interolog mapping.Ensembl BioMarts: a hub for data retrieval across taxonomic space.Critical amino acid residues in proteins: a BioMart integration of Reactome protein annotations with PRIDE mass spectrometry data and COSMIC somatic mutations.CADRE: the Central Aspergillus Data REpository 2012 Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis.Polyglutamine repeats are associated to specific sequence biases that are conserved among eukaryotes.GrameneMart: the BioMart data portal for the Gramene project.PomBase: a comprehensive online resource for fission yeast.Large-scale analysis of microRNA evolution.mirTarPri: improved prioritization of microRNA targets through incorporation of functional genomics data Identification of drought-responsive universal stress proteins in viridiplantae.Under-dominance constrains the evolution of negative autoregulation in diploids.The role of protein interactions in mediating essentiality and synthetic lethality.

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Ensembl Genomes: extending Ensembl across the taxonomic space

http://www.wikidata.org/entity/Q33600852

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2009 nî lūn-bûn

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2009 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

@hyw

2009 թվականի նոյեմբերին հրատարակված գիտական հոդված

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2009年の論文

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2009年論文

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2009年論文

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2009年論文

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2009年論文

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2009年論文

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2009年论文

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Ensembl Genomes: extending Ensembl across the taxonomic space

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Ensembl Genomes: extending Ensembl across the taxonomic space

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Population genomics of domestic and wild yeasts

dbSNP: the NCBI database of genetic variation

The 1001 genomes project for Arabidopsis thaliana

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

Integrating biological data--the Distributed Annotation System

Gene Ontology annotations at SGD: new data sources and annotation methods

VectorBase: a data resource for invertebrate vector genomics

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The generic genome browser: a building block for a model organism system database

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