In vitro vs in silico detected SNPs for the development of a genotyping array: what can we learn from a non-model species?
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High-throughput SNP genotyping in the highly heterozygous genome of Eucalyptus: assay success, polymorphism and transferability across speciesImprints of natural selection along environmental gradients in phenology-related genes of Quercus petraeaOpen access to tree genomes: the path to a better forestA toolkit for bulk PCR-based marker design from next-generation sequence data: application for development of a framework linkage map in bulb onion (Allium cepa L.)Development of high-throughput SNP-based genotyping in Acacia auriculiformis x A. mangium hybrids using short-read transcriptome dataSNP discovery using Next Generation Transcriptomic Sequencing in Atlantic herring (Clupea harengus)Targeted SNP discovery in Atlantic salmon (Salmo salar) genes using a 3'UTR-primed SNP detection approach.Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine.Novel tools for conservation genomics: comparing two high-throughput approaches for SNP discovery in the transcriptome of the European hakeHigh-throughput SNP genotyping in Cucurbita pepo for map construction and quantitative trait loci mapping.A transcriptome map of perennial ryegrass (Lolium perenne L.).Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms.Comparative mapping in the Fagaceae and beyond with EST-SSRs.Annotated genetic linkage maps of Pinus pinaster Ait. from a Central Spain population using microsatellite and gene based markers.Cost-effective genome-wide estimation of allele frequencies from pooled DNA in Atlantic salmon (Salmo salar L.).High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination.Cross-amplification and validation of SNPs conserved over 44 million years between seals and dogsTranscriptome-wide single nucleotide polymorphisms (SNPs) for abalone (Haliotis midae): validation and application using GoldenGate medium-throughput genotyping assays.Western white pine SNP discovery and high-throughput genotyping for breeding and conservation applicationsPopulation structure and genetic diversity characterization of a sunflower association mapping population using SSR and SNP markers.Development and Validation of Single Nucleotide Polymorphisms (SNPs) Markers from Two Transcriptome 454-Runs of Turbot (Scophthalmus maximus) Using High-Throughput Genotyping.Genomic exploration and molecular marker development in a large and complex conifer genome using RADseq and mRNAseq.Single-nucleotide polymorphism discovery and validation in high-density SNP array for genetic analysis in European white oaks.First insights into the transcriptome and development of new genomic tools of a widespread circum-Mediterranean tree species, Pinus halepensis Mill.Development of SNP-genotyping arrays in two shellfish species.Effects of introgression on the genetic population structure of two ecologically and economically important conifer species: lodgepole pine (Pinus contorta var. latifolia) and jack pine (Pinus banksiana).Rates of assay success and genotyping error when single nucleotide polymorphism genotyping in non-model organisms: a case study in the Antarctic fur seal.A draft fur seal genome provides insights into factors affecting SNP validation and how to mitigate them.Development of high-density SNP genotyping arrays for white spruce (Picea glauca) and transferability to subtropical and nordic congeners.Outlier loci highlight the direction of introgression in oaks.High-density SNP assay development for genetic analysis in maritime pine (Pinus pinaster).High-throughput and parallel SNP discovery in selected candidate genes in Eucalyptus camaldulensis using Illumina NGS platform.Main and epistatic QTL analyses for Sclerotinia Head Rot resistance in sunflower.
P2860
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P2860
In vitro vs in silico detected SNPs for the development of a genotyping array: what can we learn from a non-model species?
description
2010 nî lūn-bûn
@nan
2010 թուականի Յունիսին հրատարակուած գիտական յօդուած
@hyw
2010 թվականի հունիսին հրատարակված գիտական հոդված
@hy
2010年の論文
@ja
2010年論文
@yue
2010年論文
@zh-hant
2010年論文
@zh-hk
2010年論文
@zh-mo
2010年論文
@zh-tw
2010年论文
@wuu
name
In vitro vs in silico detected ...... earn from a non-model species?
@ast
In vitro vs in silico detected ...... earn from a non-model species?
@en
type
label
In vitro vs in silico detected ...... earn from a non-model species?
@ast
In vitro vs in silico detected ...... earn from a non-model species?
@en
prefLabel
In vitro vs in silico detected ...... earn from a non-model species?
@ast
In vitro vs in silico detected ...... earn from a non-model species?
@en
P2093
P2860
P50
P1433
P1476
In vitro vs in silico detected ...... earn from a non-model species?
@en
P2093
Barbara Vornam
Franck Salin
Jean-Marc Frigerio
María-Teresa Cervera
Pauline Garnier-Géré
P2860
P304
P356
10.1371/JOURNAL.PONE.0011034
P407
P577
2010-06-09T00:00:00Z