MLTreeMap--accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies.
about
Integrative analysis of environmental sequences using MEGAN4Metagenomics, Metatranscriptomics, and Metabolomics Approaches for Microbiome AnalysisNext-generation sequencing (NGS) for assessment of microbial water quality: current progress, challenges, and future opportunitiesTwo new computational methods for universal DNA barcoding: a benchmark using barcode sequences of bacteria, archaea, animals, fungi, and land plantsAccurate extension of multiple sequence alignments using a phylogeny-aware graph algorithmeggNOG v4.0: nested orthology inference across 3686 organismsClass prediction and feature selection with linear optimization for metagenomic count data.Mining RNA-seq data for infections and contaminations.Classification of metagenomics data at lower taxonomic level using a robust supervised classifier.A genomic perspective on a new bacterial genus and species from the Alcaligenaceae family, Basilea psittacipulmonisAnalysis of plant microbe interactions in the era of next generation sequencing technologies.pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree.RAIphy: phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles.Evaluating the fidelity of de novo short read metagenomic assembly using simulated dataThe phylogenetic diversity of metagenomes.Peptide markers of aminoacyl tRNA synthetases facilitate taxa counting in metagenomic dataAnalysis of 16S rRNA environmental sequences using MEGANA format for phylogenetic placements.Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes.A comparative evaluation of sequence classification programs.Nitrification expanded: discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi.Reconstruction of ribosomal RNA genes from metagenomic data.Rapid phylogenetic and functional classification of short genomic fragments with signature peptidesUsing phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usagePhylogenetics and the human microbiomeMetaPathways: a modular pipeline for constructing pathway/genome databases from environmental sequence information.Phylogenetic placement of metagenomic reads using the minimum evolution principleMBBC: an efficient approach for metagenomic binning based on clustering.Taxator-tk: precise taxonomic assignment of metagenomes by fast approximation of evolutionary neighborhoods.Evidence of carbon fixation pathway in a bacterium from candidate phylum SBR1093 revealed with genomic analysis.Exploiting topic modeling to boost metagenomic reads binning.Proteins Related to the Type I Secretion System Are Associated with Secondary SecA_DEAD Domain Proteins in Some Species of Planctomycetes, Verrucomicrobia, Proteobacteria, Nitrospirae and ChlorobiEvaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities.A minimalistic microbial food web in an excavated deep subsurface clay rock.Metagenomic sequencing of marine periphyton: taxonomic and functional insights into biofilm communities.A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communitiesChallenges of the Unknown: Clinical Application of Microbial MetagenomicsLCA*: an entropy-based measure for taxonomic assignment within assembled metagenomes.Metabarcoding of marine nematodes - evaluation of reference datasets used in tree-based taxonomy assignment approach.
P2860
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P2860
MLTreeMap--accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies.
description
2010 nî lūn-bûn
@nan
2010 թուականի Օգոստոսին հրատարակուած գիտական յօդուած
@hyw
2010 թվականի օգոստոսին հրատարակված գիտական հոդված
@hy
2010年の論文
@ja
2010年論文
@yue
2010年論文
@zh-hant
2010年論文
@zh-hk
2010年論文
@zh-mo
2010年論文
@zh-tw
2010年论文
@wuu
name
MLTreeMap--accurate Maximum Li ...... ctional reference phylogenies.
@ast
MLTreeMap--accurate Maximum Li ...... ctional reference phylogenies.
@en
type
label
MLTreeMap--accurate Maximum Li ...... ctional reference phylogenies.
@ast
MLTreeMap--accurate Maximum Li ...... ctional reference phylogenies.
@en
altLabel
MLTreeMap - accurate Maximum L ...... nctional reference phylogenies
@en
prefLabel
MLTreeMap--accurate Maximum Li ...... ctional reference phylogenies.
@ast
MLTreeMap--accurate Maximum Li ...... ctional reference phylogenies.
@en
P2093
P2860
P356
P1433
P1476
MLTreeMap--accurate Maximum Li ...... ctional reference phylogenies.
@en
P2093
Alexandros Stamatakis
Manuel Stark
Simon A Berger
P2860
P2888
P356
10.1186/1471-2164-11-461
P407
P577
2010-08-05T00:00:00Z
P5875
P6179
1036046285