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The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase.

The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase.

http://www.wikidata.org/entity/Q33722783

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Initial events in bacterial transcription initiation General transfer matrix formalism to calculate DNA-protein-drug binding in gene regulation: application to OR operator of phage Sequence-independent upstream DNA-alphaCTD interactions strongly stimulate Escherichia coli RNA polymerase-lacUV5 promoter association.Identification of multiple rate-limiting steps during the human mitochondrial transcription cycle in vitro One-step DNA melting in the RNA polymerase cleft opens the initiation bubble to form an unstable open complex.Real-time characterization of intermediates in the pathway to open complex formation by Escherichia coli RNA polymerase at the T7A1 promoter Catching RNA polymerase in the act of binding: intermediates in transcription illuminated by synchrotron footprinting.Upstream promoter sequences and alphaCTD mediate stable DNA wrapping within the RNA polymerase-promoter open complex Real-time footprinting of DNA in the first kinetically significant intermediate in open complex formation by Escherichia coli RNA polymerase.Predicting the strength of UP-elements and full-length E. coli σE promoters.Sequence-dependent upstream DNA-RNA polymerase interactions in the open complex with lambdaPR and lambdaPRM promoters and implications for the mechanism of promoter interference Mechanism of bacterial transcription initiation: RNA polymerase - promoter binding, isomerization to initiation-competent open complexes, and initiation of RNA synthesis Fluorescence Resonance Energy Transfer Characterization of DNA Wrapping in Closed and Open Escherichia coli RNA Polymerase-λP(R) Promoter Complexes Advances in bacterial promoter recognition and its control by factors that do not bind DNA.Transcription initiation by mix and match elements: flexibility for polymerase binding to bacterial promoters Role of cis-acting sites in stimulation of the phage λ P(RM) promoter by CI-mediated looping Analysis of RNA polymerase-promoter complex formation.Phage-encoded inhibitor of Staphylococcus aureus transcription exerts context-dependent effects on promoter function in a modified Escherichia coli-based transcription system.Probing DNA binding, DNA opening, and assembly of a downstream clamp/jaw in Escherichia coli RNA polymerase-lambdaP(R) promoter complexes using salt and the physiological anion glutamate.Key roles of the downstream mobile jaw of Escherichia coli RNA polymerase in transcription initiation.RNA polymerase and an activator form discrete subcomplexes in a transcription initiation complex.Solute probes of conformational changes in open complex (RPo) formation by Escherichia coli RNA polymerase at the lambdaPR promoter: evidence for unmasking of the active site in the isomerization step and for large-scale coupled folding in the subse Structural modules of RNA polymerase required for transcription from promoters containing downstream basal promoter element GGGA.DNA melting by RNA polymerase at the T7A1 promoter precedes the rate-limiting step at 37 degrees C and results in the accumulation of an off-pathway intermediate.Mutational analysis of Escherichia coli heat shock transcription factor sigma 32 reveals similarities with sigma 70 in recognition of the -35 promoter element and differences in promoter DNA melting and -10 recognition.Extended upstream A-T sequence increases T7 promoter strength.Study of in vitro transcriptional binding effects and noise using constitutive promoters combined with UP element sequences in Escherichia coli.Conformational heterogeneity and bubble dynamics in single bacterial transcription initiation complexes.Effects of Discontinuities in the DNA Template on Abortive Initiation and Promoter Escape byEscherichia coliRNA Polymerase

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P2860

The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase.

http://www.wikidata.org/entity/Q33722783

description

2004 nî lūn-bûn

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2004 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած

@hyw

2004 թվականի դեկտեմբերին հրատարակված գիտական հոդված

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2004年の論文

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2004年論文

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2004年論文

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2004年論文

@zh-hk

2004年論文

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2004年論文

@zh-tw

2004年论文

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name

The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase.

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The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase.

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type

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The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase.

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The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase.

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The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase.

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The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase.

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PNAS.0405779102

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Proceedings of the National Academy of Sciences of the United States of America

P1476

The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase.

@en

P2093

Caroline A Davis

http://www.w3.org/2001/XMLSchema#string

M Thomas Record

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Michael W Capp

http://www.w3.org/2001/XMLSchema#string

Ruth M Saecker

http://www.w3.org/2001/XMLSchema#string

P2860

Structure of the bacterial RNA polymerase promoter specificity sigma subunit

Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution

Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 A resolution

Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex

Structural basis of transcription activation: the CAP-alpha CTD-DNA complex

Structure of a ternary transcription activation complex

Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms

Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn

Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees

Biochemistry and structural biology of transcription factor IID (TFIID)

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285-290

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scholarly article

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10.1073/PNAS.0405779102

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2

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102

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2004-12-30T00:00:00Z

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Escherichia coli

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544287

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