The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase.
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Initial events in bacterial transcription initiationGeneral transfer matrix formalism to calculate DNA-protein-drug binding in gene regulation: application to OR operator of phageSequence-independent upstream DNA-alphaCTD interactions strongly stimulate Escherichia coli RNA polymerase-lacUV5 promoter association.Identification of multiple rate-limiting steps during the human mitochondrial transcription cycle in vitroOne-step DNA melting in the RNA polymerase cleft opens the initiation bubble to form an unstable open complex.Real-time characterization of intermediates in the pathway to open complex formation by Escherichia coli RNA polymerase at the T7A1 promoterCatching RNA polymerase in the act of binding: intermediates in transcription illuminated by synchrotron footprinting.Upstream promoter sequences and alphaCTD mediate stable DNA wrapping within the RNA polymerase-promoter open complexReal-time footprinting of DNA in the first kinetically significant intermediate in open complex formation by Escherichia coli RNA polymerase.Predicting the strength of UP-elements and full-length E. coli σE promoters.Sequence-dependent upstream DNA-RNA polymerase interactions in the open complex with lambdaPR and lambdaPRM promoters and implications for the mechanism of promoter interferenceMechanism of bacterial transcription initiation: RNA polymerase - promoter binding, isomerization to initiation-competent open complexes, and initiation of RNA synthesisFluorescence Resonance Energy Transfer Characterization of DNA Wrapping in Closed and Open Escherichia coli RNA Polymerase-λP(R) Promoter ComplexesAdvances in bacterial promoter recognition and its control by factors that do not bind DNA.Transcription initiation by mix and match elements: flexibility for polymerase binding to bacterial promotersRole of cis-acting sites in stimulation of the phage λ P(RM) promoter by CI-mediated loopingAnalysis of RNA polymerase-promoter complex formation.Phage-encoded inhibitor of Staphylococcus aureus transcription exerts context-dependent effects on promoter function in a modified Escherichia coli-based transcription system.Probing DNA binding, DNA opening, and assembly of a downstream clamp/jaw in Escherichia coli RNA polymerase-lambdaP(R) promoter complexes using salt and the physiological anion glutamate.Key roles of the downstream mobile jaw of Escherichia coli RNA polymerase in transcription initiation.RNA polymerase and an activator form discrete subcomplexes in a transcription initiation complex.Solute probes of conformational changes in open complex (RPo) formation by Escherichia coli RNA polymerase at the lambdaPR promoter: evidence for unmasking of the active site in the isomerization step and for large-scale coupled folding in the subseStructural modules of RNA polymerase required for transcription from promoters containing downstream basal promoter element GGGA.DNA melting by RNA polymerase at the T7A1 promoter precedes the rate-limiting step at 37 degrees C and results in the accumulation of an off-pathway intermediate.Mutational analysis of Escherichia coli heat shock transcription factor sigma 32 reveals similarities with sigma 70 in recognition of the -35 promoter element and differences in promoter DNA melting and -10 recognition.Extended upstream A-T sequence increases T7 promoter strength.Study of in vitro transcriptional binding effects and noise using constitutive promoters combined with UP element sequences in Escherichia coli.Conformational heterogeneity and bubble dynamics in single bacterial transcription initiation complexes.Effects of Discontinuities in the DNA Template on Abortive Initiation and Promoter Escape byEscherichia coliRNA Polymerase
P2860
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P2860
The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase.
description
2004 nî lūn-bûn
@nan
2004 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած
@hyw
2004 թվականի դեկտեմբերին հրատարակված գիտական հոդված
@hy
2004年の論文
@ja
2004年論文
@yue
2004年論文
@zh-hant
2004年論文
@zh-hk
2004年論文
@zh-mo
2004年論文
@zh-tw
2004年论文
@wuu
name
The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase.
@ast
The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase.
@en
type
label
The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase.
@ast
The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase.
@en
prefLabel
The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase.
@ast
The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase.
@en
P2093
P2860
P356
P1476
The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase.
@en
P2093
Caroline A Davis
M Thomas Record
Michael W Capp
Ruth M Saecker
P2860
P304
P356
10.1073/PNAS.0405779102
P407
P577
2004-12-30T00:00:00Z