HLA typing from RNA-Seq sequence reads - Wikidata - wikimedia - TriplyDB

HLA typing from RNA-Seq sequence reads

HLA typing from RNA-Seq sequence reads

http://www.wikidata.org/entity/Q33781090

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The impact of next-generation sequencing technologies on HLA research Translation of genomics-guided RNA-based personalised cancer vaccines: towards the bedside A population response analysis approach to assign class II HLA-epitope restrictions The relevance of HLA sequencing in population genetics studies ImmunoNodes - graphical development of complex immunoinformatics workflows HLA typing from RNA-seq data using hierarchical read weighting [corrected].OptiType: precision HLA typing from next-generation sequencing data.HLA-VBSeq: accurate HLA typing at full resolution from whole-genome sequencing data.Mapping Bias Overestimates Reference Allele Frequencies at the HLA Genes in the 1000 Genomes Project Phase I Data.Evaluation of computational programs to predict HLA genotypes from genomic sequencing data.Immunomic, genomic and transcriptomic characterization of CT26 colorectal carcinoma.Inference of high resolution HLA types using genome-wide RNA or DNA sequencing reads PSSMHCpan: a novel PSSM-based software for predicting class I peptide-HLA binding affinity Sequence-Based Genotyping of Expressed Swine Leukocyte Antigen Class I Alleles by Next-Generation Sequencing Reveal Novel Swine Leukocyte Antigen Class I Haplotypes and Alleles in Belgian, Danish, and Kenyan Fattening Pigs and Göttingen Minipigs.Human leukocyte antigen typing using a knowledge base coupled with a high-throughput oligonucleotide probe array analysis.HLAreporter: a tool for HLA typing from next generation sequencing data A catalog of HLA type, HLA expression, and neo-epitope candidates in human cancer cell lines Complete haplotype phasing of the MHC and KIR loci with targeted HaploSeq.FRED 2: an immunoinformatics framework for Python.A novel RNAseq-assisted method for MHC class I genotyping in a non-model species applied to a lethal vaccination-induced alloimmune disease TCLP: an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression Immunoinformatics and epitope prediction in the age of genomic medicine.Comprehensive analysis of cancer-associated somatic mutations in class I HLA genes.Association of HLA class I and II genes with cutaneous leishmaniasis: a case control study from Sri Lanka and a systematic review.ATHLATES: accurate typing of human leukocyte antigen through exome sequencing.Bioinformatics for cancer immunotherapy target discovery.A genomic perspective on HLA evolution.Computational genomics tools for dissecting tumour-immune cell interactions.Immunoregulatory functions of VISTA.Comparison of exome-based HLA class I genotyping tools: identification of platform-specific genotyping errors.Profiling tissue-resident T cell repertoires by RNA sequencing.Exploiting the neoantigen landscape for immunotherapy of pancreatic ductal adenocarcinoma.CIMT 2014: Next waves in cancer immunotherapy--report on the 12th annual meeting of the Association for Cancer Immunotherapy: May 6–8 2014, Mainz, Germany.Expitope 2.0: a tool to assess immunotherapeutic antigens for their potential cross-reactivity against naturally expressed proteins in human tissues.HLA genotyping by next-generation sequencing of complementary DNA.Informatics for cancer immunotherapy.MHC class I loaded ligands from breast cancer cell lines: A potential HLA-I-typed antigen collection.Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer.Computational Pipeline for the PGV-001 Neoantigen Vaccine Trial.Immunopharmacogenomics towards personalized cancer immunotherapy targeting neoantigens.

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HLA typing from RNA-Seq sequence reads

http://www.wikidata.org/entity/Q33781090

description

2012 nî lūn-bûn

@nan

2012 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած

@hyw

2012 թվականի դեկտեմբերին հրատարակված գիտական հոդված

@hy

2012年の論文

@ja

2012年論文

@yue

2012年論文

@zh-hant

2012年論文

@zh-hk

2012年論文

@zh-mo

2012年論文

@zh-tw

2012年论文

@wuu

name

HLA typing from RNA-Seq sequence reads

@ast

HLA typing from RNA-Seq sequence reads

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type

label

HLA typing from RNA-Seq sequence reads

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HLA typing from RNA-Seq sequence reads

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prefLabel

HLA typing from RNA-Seq sequence reads

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HLA typing from RNA-Seq sequence reads

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Genome Medicine

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HLA typing from RNA-Seq sequence reads

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John C Castle

http://www.w3.org/2001/XMLSchema#string

Jos de Graaf

http://www.w3.org/2001/XMLSchema#string

Martin Löwer

http://www.w3.org/2001/XMLSchema#string

Michael Schäfer

http://www.w3.org/2001/XMLSchema#string

Mustafa Diken

http://www.w3.org/2001/XMLSchema#string

Ozlem Türeci

http://www.w3.org/2001/XMLSchema#string

Valesca Boisguérin

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A user's guide to the encyclopedia of DNA elements (ENCODE)

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Mapping and quantifying mammalian transcriptomes by RNA-Seq

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations

HLA class I and II genotype of the NCI-60 cell lines

Alternative isoform regulation in human tissue transcriptomes

Allelic and haplotypic diversity of HLA-A, -B, -C, -DRB1, and -DQB1 genes in the Korean population

Transcriptome genetics using second generation sequencing in a Caucasian population

HLA-A, -B, -DRB1 allele frequencies and haplotypic association from DNA typing data of 7096 Korean cord blood units.

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10.1186/GM403

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12

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4

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Sebastian Boegel

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2012-12-22T00:00:00Z

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233972996

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23259685

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