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Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana

Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana

http://www.wikidata.org/entity/Q33801141

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New technologies for 21st century plant science Translational genomics for plant breeding with the genome sequence explosion Elucidating gene function and function evolution through comparison of co-expression networks of plants Learning from Co-expression Networks: Possibilities and Challenges Central Metabolic Responses to Ozone and Herbivory Affect Photosynthesis and Stomatal Closure Patterns of metabolite changes identified from large-scale gene perturbations in Arabidopsis using a genome-scale metabolic network Consequences of Whole-Genome Triplication as Revealed by Comparative Genomic Analyses of the Wild Radish Raphanus raphanistrum and Three Other Brassicaceae Species Coordinate Regulation of Metabolite Glycosylation and Stress Hormone Biosynthesis by TT8 in Arabidopsis The potential of text mining in data integration and network biology for plant research: a case study on Arabidopsis Systematic identification of functional plant modules through the integration of complementary data sources Discriminative local subspaces in gene expression data for effective gene function prediction.Reverse engineering: a key component of systems biology to unravel global abiotic stress cross-talk.Chapter 2: Data-driven view of disease biology Data integration through proximity-based networks provides biological principles of organization across scales.Simultaneous application of heat, drought, and virus to Arabidopsis plants reveals significant shifts in signaling networks.A systems-genetics approach and data mining tool to assist in the discovery of genes underlying complex traits in Oryza sativa.Genomics as the key to unlocking the polyploid potential of wheat.Gene coexpression network analysis as a source of functional annotation for rice genes New BAR tools for mining expression data and exploring Cis-elements in Arabidopsis thaliana.Utility and Limitations of Using Gene Expression Data to Identify Functional Associations A new RNASeq-based reference transcriptome for sugar beet and its application in transcriptome-scale analysis of vernalization and gibberellin responses.Identifying gene coexpression networks underlying the dynamic regulation of wood-forming tissues in Populus under diverse environmental conditions.Functional genomics complements quantitative genetics in identifying disease-gene associations.Genome-wide computational function prediction of Arabidopsis proteins by integration of multiple data sources.A scalable approach for discovering conserved active subnetworks across species.PiNGO: a Cytoscape plugin to find candidate genes in biological networks.Systematic discovery of novel eukaryotic transcriptional regulators using sequence homology independent prediction Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response.Prioritizing candidate disease genes by network-based boosting of genome-wide association data.Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis.Transcriptome analysis of a petal anthocyanin polymorphism in the arctic mustard, Parrya nudicaulis A gene-phenotype network for the laboratory mouse and its implications for systematic phenotyping.An integrated genomic and metabolomic framework for cell wall biology in rice.Synergistic use of plant-prokaryote comparative genomics for functional annotations Functional network construction in Arabidopsis using rule-based machine learning on large-scale data sets.The human metabolic reconstruction Recon 1 directs hypotheses of novel human metabolic functions In vivo biochemistry: quantifying ion and metabolite levels in individual cells or cultures of yeast."Guilt by association" is the exception rather than the rule in gene networks.Identification of gene modules associated with drought response in rice by network-based analysis.Interactions of an Arabidopsis RanBPM homologue with LisH-CTLH domain proteins revealed high conservation of CTLH complexes in eukaryotes

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Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana

http://www.wikidata.org/entity/Q33801141

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2010 թուականի Յունուարին հրատարակուած գիտական յօդուած

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2010 թվականի հունվարին հրատարակված գիտական հոդված

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2010年の論文

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Rational association of genes ...... twork for Arabidopsis thaliana

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Rational association of genes ...... twork for Arabidopsis thaliana

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Bindu Ambaru

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Insuk Lee

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Pranjali Thakkar

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Seung Y Rhee

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P2860

A family of diverse Cul4-Ddb1-interacting proteins includes Cdt2, which is required for S phase destruction of the replication factor Cdt1

KEGG: Kyoto Encyclopedia of Genes and Genomes

Regulation of root hair initiation and expansin gene expression in Arabidopsis

IntAct: an open source molecular interaction database

The use of gene clusters to infer functional coupling

MINT: the Molecular INTeraction database

The Biomolecular Interaction Network Database and related tools 2005 update

Prolinks: a database of protein functional linkages derived from coevolution

Proteome survey reveals modularity of the yeast cell machinery.

Rational extension of the ribosome biogenesis pathway using network-guided genetics

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10.1038/NBT.1603

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Arabidopsis thaliana

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2857375

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