The JCVI standard operating procedure for annotating prokaryotic metagenomic shotgun sequencing data. - Wikidata - wikimedia - TriplyDB

The JCVI standard operating procedure for annotating prokaryotic metagenomic shotgun sequencing data.

The JCVI standard operating procedure for annotating prokaryotic metagenomic shotgun sequencing data.

http://www.wikidata.org/entity/Q33815258

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Efficient de novo assembly of single-cell bacterial genomes from short-read data sets Spatial Molecular Architecture of the Microbial Community of a Peltigera Lichen BG7: a new approach for bacterial genome annotation designed for next generation sequencing data.Functional tradeoffs underpin salinity-driven divergence in microbial community composition.Metagenomic Analysis of the Indian Ocean Picocyanobacterial Community: Structure, Potential Function and Evolution.Going deeper: metagenome of a hadopelagic microbial community TheViral MetaGenome Annotation Pipeline(VMGAP):an automated tool for the functional annotation of viral Metagenomic shotgun sequencing data Metagenomics, paratransgenesis and the Anopheles microbiome: a portrait of the geographical distribution of the anopheline microbiota based on a meta-analysis of reported taxa.METAREP: JCVI metagenomics reports--an open source tool for high-performance comparative metagenomics.A case study for large-scale human microbiome analysis using JCVI's metagenomics reports (METAREP)Short-read reading-frame predictors are not created equal: sequence error causes loss of signal Metagenomic exploration of viruses throughout the Indian Ocean.MasABK proteins interact with proteins of the type IV pilin system to affect social motility of Myxococcus xanthus.Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters.Transcriptome analysis of Enterococcus faecalis during mammalian infection shows cells undergo adaptation and exist in a stringent response state A metagenomic framework for the study of airborne microbial communities.GRASP: guided reference-based assembly of short peptides.Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential.An overview of malaria transmission from the perspective of Amazon Anopheles vectors.Connecting biodiversity and potential functional role in modern euxinic environments by microbial metagenomics DomSign: a top-down annotation pipeline to enlarge enzyme space in the protein universe.The state of standards in genomic sciences.Draft Genome Sequence of a Multi-Metal Resistant Bacterium Pseudomonas putida ATH-43 Isolated from Greenwich Island, Antarctica.Developing of the Computer Method for Annotation of Bacterial Genes.Draft Genome Sequence of a Single Cell of SAR86 Clade Subgroup IIIa Analytical tools and databases for metagenomics in the next-generation sequencing era Draft Genome Sequence of Synechococcus sp. Strain CB0101, Isolated From the Chesapeake Bay Estuary.An in vitro biofilm model system maintaining a highly reproducible species and metabolic diversity approaching that of the human oral microbiome High throughput sequencing methods for microbiome profiling: application to food animal systems.Transcriptome analysis of Streptococcus gordonii Challis DL1 indicates a role for the biofilm-associated fruRBA operon in response to Candida albicans.Meta-omic analyses of Baltic Sea cyanobacteria: diversity, community structure and salt acclimation.MEGAnnotator: a user-friendly pipeline for microbial genomes assembly and annotation.Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic High abundance and expression of transposases in bacteria from the Baltic Sea.The response of soil microbial communities to variation in annual precipitation depends on soil nutritional status in an oligotrophic desert.A novel metatranscriptomic approach to identify gene expression dynamics during extracellular electron transfer.Comparative genomic analysis of a new tellurite-resistant Psychrobacter strain isolated from the Antarctic Peninsula.The State of Standards in Genomic Sciences

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The JCVI standard operating procedure for annotating prokaryotic metagenomic shotgun sequencing data.

http://www.wikidata.org/entity/Q33815258

description

2010 nî lūn-bûn

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2010 թուականի Մարտին հրատարակուած գիտական յօդուած

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2010 թվականի մարտին հրատարակված գիտական հոդված

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2010年の論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年论文

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The JCVI standard operating pr ...... nomic shotgun sequencing data.

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The JCVI standard operating pr ...... nomic shotgun sequencing data.

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The JCVI standard operating pr ...... nomic shotgun sequencing data.

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Standards in genomic sciences

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Douglas B Rusch

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Johannes Goll

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Leonid Kagan

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Mathangi Thiagarajan

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Prateek Kumar

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Saul Kravitz

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Sean Murphy

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The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families

Environmental shotgun sequencing: its potential and challenges for studying the hidden world of microbes

Bioinformatics for whole-genome shotgun sequencing of microbial communities

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

The COG database: an updated version includes eukaryotes

Gene ontology: tool for the unification of biology

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

Using pyrosequencing to shed light on deep mine microbial ecology

The Pfam protein families database

Enzyme-specific profiles for genome annotation: PRIAM

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229-237

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10.4056/SIGS.651139

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2

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2

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Tanja M Davidsen

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2010-03-30T00:00:00Z

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49820752

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3035284

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