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compomics-utilities: an open-source Java library for computational proteomics

compomics-utilities: an open-source Java library for computational proteomics

http://www.wikidata.org/entity/Q33840310

about

Computational phosphoproteomics: from identification to localization Unveiling novel interactions of histone chaperone Asf1 linked to TREX-2 factors Sus1 and Thp1.Making proteomics data accessible and reusable: current state of proteomics databases and repositories Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective Tools (Viewer, Library and Validator) that facilitate use of the peptide and protein identification standard format, termed mzIdentML The Exposed Proteomes of Brachyspira hyodysenteriae and B. pilosicoli MASSyPup--an 'out of the box' solution for the analysis of mass spectrometry data.Viewing the proteome: how to visualize proteomics data?mzDB: a file format using multiple indexing strategies for the efficient analysis of large LC-MS/MS and SWATH-MS data sets.DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics BatMass: a Java Software Platform for LC-MS Data Visualization in Proteomics and Metabolomics.APOSTL: An Interactive Galaxy Pipeline for Reproducible Analysis of Affinity Proteomics Data.Characterisation of the circulating acellular proteome of healthy sheep using LC-MS/MS-based proteomics analysis of serum.A community proposal to integrate proteomics activities in ELIXIR Exploring the human plasma proteome for humoral mediators of remote ischemic preconditioning--a word of caution.An update on LNCipedia: a database for annotated human lncRNA sequences.Mass-Up: an all-in-one open software application for MALDI-TOF mass spectrometry knowledge discovery.Proteomic analysis of formalin-fixed paraffin-embedded glomeruli suggests depletion of glomerular filtration barrier proteins in two-kidney, one-clip hypertensive rats Bioinformatic progress and applications in metaproteogenomics for bridging the gap between genomic sequences and metabolic functions in microbial communities.Honey Bee Infecting Lake Sinai Viruses.Identification of B6T173 (ZmPrx35) as the prevailing peroxidase in highly insect-resistant maize (Zea mays, p84C3) kernels by activity-directed purification.Methods to Calculate Spectrum Similarity.Data from proteome analysis of Lasiodiplodia theobromae (Botryosphaeriaceae).File formats commonly used in mass spectrometry proteomics.Quantitative proteomics comparison of arachnoid cyst fluid and cerebrospinal fluid collected perioperatively from arachnoid cyst patients.The multidrug resistance pump ABCB1 is a substrate for the ubiquitin ligase NEDD4-1 Current methods for global proteome identification.Crowdsourcing in proteomics: public resources lead to better experiments.The human oligodendrocyte proteome.Algorithms and design strategies towards automated glycoproteomics analysis.Computational Methods in Mass Spectrometry-Based Proteomics.Visualization, Inspection and Interpretation of Shotgun Proteomics Identification Results.Database Search Engines: Paradigms, Challenges and Solutions.iTRAQ as a method for optimization: enhancing peptide recovery after gel fractionation.Epac1-deficient mice have bleeding phenotype and thrombocytes with decreased GPIbβ expression In-depth characterization of the cerebrospinal fluid (CSF) proteome displayed through the CSF proteome resource (CSF-PR).DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra.Tandem Mass Spectrum Sequencing: An Alternative to Database Search Engines in Shotgun Proteomics.Functional interactions among filamentous Epsilonproteobacteria and Bacteroidetes in a deep-sea hydrothermal vent biofilm.IQuant: an automated pipeline for quantitative proteomics based upon isobaric tags.

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P2860

compomics-utilities: an open-source Java library for computational proteomics

http://www.wikidata.org/entity/Q33840310

description

2011 nî lūn-bûn

@nan

2011 թուականի Մարտին հրատարակուած գիտական յօդուած

@hyw

2011 թվականի մարտին հրատարակված գիտական հոդված

@hy

2011年の論文

@ja

2011年論文

@yue

2011年論文

@zh-hant

2011年論文

@zh-hk

2011年論文

@zh-mo

2011年論文

@zh-tw

2011年论文

@wuu

name

compomics-utilities: an open-source Java library for computational proteomics

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compomics-utilities: an open-source Java library for computational proteomics

@en

type

label

compomics-utilities: an open-source Java library for computational proteomics

@ast

compomics-utilities: an open-source Java library for computational proteomics

@en

prefLabel

compomics-utilities: an open-source Java library for computational proteomics

@ast

compomics-utilities: an open-source Java library for computational proteomics

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BMC Bioinformatics

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compomics-utilities: an open-source Java library for computational proteomics

@en

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Frode S Berven

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Harald Barsnes

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Niklaas Colaert

http://www.w3.org/2001/XMLSchema#string

P2860

OpenMS - an open-source software framework for mass spectrometry

Probability-based protein identification by searching sequence databases using mass spectrometry data

Mass spectrometry-based proteomics

Open mass spectrometry search algorithm

mzML--a community standard for mass spectrometry data

ProteomeCommons.org IO Framework: reading and writing multiple proteomics data formats.

InSilicoSpectro: an open-source proteomics library.

MascotDatfile: an open-source library to fully parse and analyse MASCOT MS/MS search results.

ProteoWizard: open source software for rapid proteomics tools development.

Peptizer, a tool for assessing false positive peptide identifications and manually validating selected results.

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1471-2105-12-70

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70

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10.1186/1471-2105-12-70

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12

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Albert Sickmann

Lennart Martens

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50347591

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1049011488

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21385435

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open-source software

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3060842

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