Short reads and nonmodel species: exploring the complexities of next-generation sequence assembly and SNP discovery in the absence of a reference genome.
about
Generation of SNP datasets for orangutan population genomics using improved reduced-representation sequencing and direct comparisons of SNP calling algorithms.Evaluating adaptive divergence between migratory and nonmigratory ecotypes of a salmonid fish, Oncorhynchus mykissCapturing chloroplast variation for molecular ecology studies: a simple next generation sequencing approach applied to a rainforest tree.Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencingSNP development from RNA-seq data in a nonmodel fish: how many individuals are needed for accurate allele frequency prediction?Paralogs are revealed by proportion of heterozygotes and deviations in read ratios in genotyping-by-sequencing data from natural populations.Next-generation sequencing-based transcriptome analysis of Helicoverpa armigera Larvae immune-primed with Photorhabdus luminescens TT01.Linkage maps of the Atlantic salmon (Salmo salar) genome derived from RAD sequencing.Single nucleotide polymorphisms across a species' range: implications for conservation studies of Pacific salmon.Novel tools for conservation genomics: comparing two high-throughput approaches for SNP discovery in the transcriptome of the European hakeComparison between Normalised and Unnormalised 454-Sequencing Libraries for Small-Scale RNA-Seq Studies.Development of genomic resources for Pacific Herring through targeted transcriptome pyrosequencingDe novo assembly and characterization of the root transcriptome of Aegilops variabilis during an interaction with the cereal cyst nematode.A transcriptome map of perennial ryegrass (Lolium perenne L.).Meiotic maps of sockeye salmon derived from massively parallel DNA sequencingRank and order: evaluating the performance of SNPs for individual assignment in a non-model organism.Genetics and genomics of disease resistance in salmonid speciesPopulation genomic footprints of selection and associations with climate in natural populations of Arabidopsis halleri from the AlpsParallel tagged amplicon sequencing of transcriptome-based genetic markers for Triturus newts with the Ion Torrent next-generation sequencing platform.SNP discovery in European anchovy (Engraulis encrasicolus, L) by high-throughput transcriptome and genome sequencing.Identification of single nucleotide polymorphisms from the transcriptome of an organism with a whole genome duplication.Transcriptome analysis of salt tolerant common bean (Phaseolus vulgaris L.) under saline conditions.RNA-Seq analysis using de novo transcriptome assembly as a reference for the salmon louse Caligus rogercresseyi.Development and Validation of Single Nucleotide Polymorphism (SNP) Markers from an Expressed Sequence Tag (EST) Database in Olive Flounder (Paralichthys olivaceus).Identification of Laying-Related SNP Markers in Geese Using RAD SequencingThe complete genome sequence of the African buffalo (Syncerus caffer).Aye-aye population genomic analyses highlight an important center of endemism in northern Madagascar.Sequence comparative analysis using networks: software for evaluating de novo transcript assembly from next-generation sequencing.Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha).Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges.Next generation quantitative genetics in plantsRecent progress and challenges in population genetics of polyploid organisms: an overview of current state-of-the-art molecular and statistical tools.Sequencing technologies for animal cell culture research.Effects of crossovers between homeologs on inheritance and population genomics in polyploid-derived salmonid fishes.Genomic islands of divergence linked to ecotypic variation in sockeye salmon.Comparative performance of double-digest RAD sequencing across divergent arachnid lineages.Ecological population genomics in the marine environment.Novel SNP Discovery in African Buffalo, Syncerus caffer, using high-throughput Sequencing.Assembling a dual purpose TaqMan-based panel of single-nucleotide polymorphism markers in rainbow trout and steelhead (Oncorhynchus mykiss) for association mapping and population genetics analysis.Transcriptome sequencing and high-resolution melt analysis advance single nucleotide polymorphism discovery in duplicated salmonids.
P2860
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P2860
Short reads and nonmodel species: exploring the complexities of next-generation sequence assembly and SNP discovery in the absence of a reference genome.
description
2011 nî lūn-bûn
@nan
2011 թուականի Մարտին հրատարակուած գիտական յօդուած
@hyw
2011 թվականի մարտին հրատարակված գիտական հոդված
@hy
2011年の論文
@ja
2011年論文
@yue
2011年論文
@zh-hant
2011年論文
@zh-hk
2011年論文
@zh-mo
2011年論文
@zh-tw
2011年论文
@wuu
name
Short reads and nonmodel speci ...... absence of a reference genome.
@ast
Short reads and nonmodel speci ...... absence of a reference genome.
@en
type
label
Short reads and nonmodel speci ...... absence of a reference genome.
@ast
Short reads and nonmodel speci ...... absence of a reference genome.
@en
prefLabel
Short reads and nonmodel speci ...... absence of a reference genome.
@ast
Short reads and nonmodel speci ...... absence of a reference genome.
@en
P2093
P2860
P1476
Short reads and nonmodel speci ...... absence of a reference genome.
@en
P2093
P2860
P304
P356
10.1111/J.1755-0998.2010.02969.X
P478
11 Suppl 1
P577
2011-03-01T00:00:00Z