deepTools: a flexible platform for exploring deep-sequencing data. - Wikidata - wikimedia - TriplyDB

deepTools: a flexible platform for exploring deep-sequencing data.

deepTools: a flexible platform for exploring deep-sequencing data.

http://www.wikidata.org/entity/Q33860863

about

Extra-coding RNAs regulate neuronal DNA methylation dynamics ATRX binds to atypical chromatin domains at the 3' exons of zinc finger genes to preserve H3K9me3 enrichment Enhanced Methylation Analysis by Recovery of Unsequenceable Fragments 5'-Hydroxymethylcytosine Precedes Loss of CpG Methylation in Enhancers and Genes Undergoing Activation in Cardiomyocyte Maturation The DNA methyltransferase DNMT3C protects male germ cells from transposon activity SeqPlots - Interactive software for exploratory data analyses, pattern discovery and visualization in genomics deepTools2: a next generation web server for deep-sequencing data analysis Activation of individual L1 retrotransposon instances is restricted to cell-type dependent permissive loci Shared Enhancer Activity in the Limbs and Phallus and Functional Divergence of a Limb-Genital cis-Regulatory Element in Snakes Genome-wide mapping of 5-hydroxymethyluracil in the eukaryote parasite Leishmania Temporal Shift of Circadian-Mediated Gene Expression and Carbon Fixation Contributes to Biomass Heterosis in Maize Hybrids PfAP2Tel, harbouring a non-canonical DNA-binding AP2 domain, binds to Plasmodium falciparum telomeres Pattern Recognition on Read Positioning in Next Generation Sequencing.Phf8 loss confers resistance to depression-like and anxiety-like behaviors in mice SLY regulates genes involved in chromatin remodeling and interacts with TBL1XR1 during sperm differentiation.Logical modeling of lymphoid and myeloid cell specification and transdifferentiation.A transcription factor hierarchy defines an environmental stress response network Nipbl Interacts with Zfp609 and the Integrator Complex to Regulate Cortical Neuron Migration.Combinatorial activities of SHORT VEGETATIVE PHASE and FLOWERING LOCUS C define distinct modes of flowering regulation in Arabidopsis.Age-associated chromatin relaxation is enhanced in Huntington's disease mice.Histone gene replacement reveals a post-transcriptional role for H3K36 in maintaining metazoan transcriptome fidelity.TIAM1 Antagonizes TAZ/YAP Both in the Destruction Complex in the Cytoplasm and in the Nucleus to Inhibit Invasion of Intestinal Epithelial Cells Histone variant H2A.J accumulates in senescent cells and promotes inflammatory gene expression.ORIO (Online Resource for Integrative Omics): a web-based platform for rapid integration of next generation sequencing data.RNA-dependent chromatin association of transcription elongation factors and Pol II CTD kinases.Hormone-dependent control of developmental timing through regulation of chromatin accessibility.MOF-associated complexes ensure stem cell identity and Xist repression.Optimized Method for Robust Transcriptome Profiling of Minute Tissues Using Laser Capture Microdissection and Low-Input RNA-Seq.Loss of Asxl2 leads to myeloid malignancies in mice Transposon-driven transcription is a conserved feature of vertebrate spermatogenesis and transcript evolution m(6)A RNA methylation promotes XIST-mediated transcriptional repression Ethylene induces combinatorial effects of histone H3 acetylation in gene expression in Arabidopsis.metaseq: a Python package for integrative genome-wide analysis reveals relationships between chromatin insulators and associated nuclear mRNA.Insights into the epigenomic landscape of the human malaria vector Anopheles gambiae Dynamic DNA methylation orchestrates cardiomyocyte development, maturation and disease.Regulatory evolution of innate immunity through co-option of endogenous retroviruses.Histone H3 globular domain acetylation identifies a new class of enhancers.Successful transmission and transcriptional deployment of a human chromosome via mouse male meiosis A Multi-step Transcriptional and Chromatin State Cascade Underlies Motor Neuron Programming from Embryonic Stem Cells.Subgenic Pol II interactomes identify region-specific transcription elongation regulators

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deepTools: a flexible platform for exploring deep-sequencing data.

http://www.wikidata.org/entity/Q33860863

description

2014 nî lūn-bûn

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2014 թուականի Մայիսին հրատարակուած գիտական յօդուած

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2014 թվականի մայիսին հրատարակված գիտական հոդված

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2014年の論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年论文

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deepTools: a flexible platform for exploring deep-sequencing data.

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deepTools: a flexible platform for exploring deep-sequencing data.

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deepTools: a flexible platform for exploring deep-sequencing data.

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deepTools: a flexible platform for exploring deep-sequencing data.

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Nucleic Acids Research

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deepTools: a flexible platform for exploring deep-sequencing data

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Friederike Dündar

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Sarah Diehl

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P2860

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

Dissemination of scientific software with Galaxy ToolShed

Summarizing and correcting the GC content bias in high-throughput sequencing

Integrative genomics viewer

Systematic bias in high-throughput sequencing data and its correction by BEADS.

Normalization, bias correction, and peak calling for ChIP-seq.

Drosophila dosage compensation involves enhanced Pol II recruitment to male X-linked promoters.

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scholarly article

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10.1093/NAR/GKU365

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Web Server issue

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42

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Björn A Grüning

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2014-05-05T00:00:00Z

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