PeakRanger: a cloud-enabled peak caller for ChIP-seq data.
about
The iPlant Collaborative: Cyberinfrastructure for Plant BiologyTranslational biomedical informatics in the cloud: present and futurePractical guidelines for the comprehensive analysis of ChIP-seq dataSingle-cell Transcriptome Study as Big DataSex-Biased Transcriptome of Schistosoma mansoni: Host-Parasite Interaction, Genetic Determinants and Epigenetic Regulators Are Associated with Sexual DifferentiationGenome-wide predictors of NF-κB recruitment and transcriptional activityMUSIC: identification of enriched regions in ChIP-Seq experiments using a mappability-corrected multiscale signal processing framework.DNA methylation profiling of primary neuroblastoma tumors using methyl-CpG-binding domain sequencing.Bioinformatics clouds for big data manipulationMaSC: mappability-sensitive cross-correlation for estimating mean fragment length of single-end short-read sequencing dataIdentification of transcription factor binding sites from ChIP-seq data at high resolution.A survey of motif finding Web tools for detecting binding site motifs in ChIP-Seq data.Navigating and mining modENCODE data.From human monocytes to genome-wide binding sites--a protocol for small amounts of blood: monocyte isolation/ChIP-protocol/library amplification/genome wide computational data analysis.BIDCHIPS: bias decomposition and removal from ChIP-seq data clarifies true binding signal and its functional correlates.Novel nuclear localization and potential function of insulin-like growth factor-1 receptor/insulin receptor hybrid in corneal epithelial cellsChIP-seq Data Processing for PcG Proteins and Associated Histone Modifications.Characterising ChIP-seq binding patterns by model-based peak shape deconvolution.Exposure to hycanthone alters chromatin structure around specific gene functions and specific repeats in Schistosoma mansoniSystematic evaluation of factors influencing ChIP-seq fidelityThe Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding.Decoding ChIP-seq with a double-binding signal refines binding peaks to single-nucleotides and predicts cooperative interaction.High resolution genome wide binding event finding and motif discovery reveals transcription factor spatial binding constraintsPolycomb- and REST-associated histone deacetylases are independent pathways toward a mature neuronal phenotype.Global analysis of transcription factor-binding sites in yeast using ChIP-Seq.Stormbow: A Cloud-Based Tool for Reads Mapping and Expression Quantification in Large-Scale RNA-Seq StudiesA comprehensive map of genome-wide gene regulation in Mycobacterium tuberculosis.The Epigenome of Schistosoma mansoni Provides Insight about How Cercariae Poise Transcription until Infection.Detecting broad domains and narrow peaks in ChIP-seq data with hiddenDomains.An algorithmic perspective of de novo cis-regulatory motif finding based on ChIP-seq data.Initiation of stem cell differentiation involves cell cycle-dependent regulation of developmental genes by Cyclin DDynamic analysis of gene expression and genome-wide transcription factor binding during lineage specification of multipotent progenitors.Principles of nucleation of H3K27 methylation during embryonic development.An introduction to the informatics of "next-generation" sequencing.When cloud computing meets bioinformatics: a review.Scalability and Validation of Big Data Bioinformatics Software.SparkBLAST: scalable BLAST processing using in-memory operationsDevelopment of Peptidomimetic Inhibitors of the ERG Gene Fusion Product in Prostate Cancer.Differential roles for MBD2 and MBD3 at methylated CpG islands, active promoters and binding to exon sequences.Survey of MapReduce frame operation in bioinformatics.
P2860
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P2860
PeakRanger: a cloud-enabled peak caller for ChIP-seq data.
description
2011 nî lūn-bûn
@nan
2011 թուականի Մայիսին հրատարակուած գիտական յօդուած
@hyw
2011 թվականի մայիսին հրատարակված գիտական հոդված
@hy
2011年の論文
@ja
2011年論文
@yue
2011年論文
@zh-hant
2011年論文
@zh-hk
2011年論文
@zh-mo
2011年論文
@zh-tw
2011年论文
@wuu
name
PeakRanger: a cloud-enabled peak caller for ChIP-seq data.
@ast
PeakRanger: a cloud-enabled peak caller for ChIP-seq data.
@en
type
label
PeakRanger: a cloud-enabled peak caller for ChIP-seq data.
@ast
PeakRanger: a cloud-enabled peak caller for ChIP-seq data.
@en
prefLabel
PeakRanger: a cloud-enabled peak caller for ChIP-seq data.
@ast
PeakRanger: a cloud-enabled peak caller for ChIP-seq data.
@en
P2860
P356
P1433
P1476
PeakRanger: a cloud-enabled peak caller for ChIP-seq data.
@en
P2093
Robert Grossman
P2860
P2888
P356
10.1186/1471-2105-12-139
P577
2011-05-09T00:00:00Z
P5875
P6179
1004476894