Dynameomics: a comprehensive database of protein dynamics. - Wikidata - wikimedia - TriplyDB

Dynameomics: a comprehensive database of protein dynamics.

Dynameomics: a comprehensive database of protein dynamics.

http://www.wikidata.org/entity/Q33943177

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PCDB: a database of protein conformational diversity Synergistic applications of MD and NMR for the study of biological systems BIGNASim: a NoSQL database structure and analysis portal for nucleic acids simulation data A Multi-scale Computational Platform to Mechanistically Assess the Effect of Genetic Variation on Drug Responses in Human Erythrocyte Metabolism SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomena WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictions Artificial proteins as allosteric modulators of PDZ3 and SH3 in two-domain constructs: A computational characterization of novel chimeric proteins.Dynameomics: data-driven methods and models for utilizing large-scale protein structure repositories for improving fragment-based loop prediction.Generation of a consensus protein domain dictionary.The utility of hydrogen/deuterium exchange mass spectrometry in biopharmaceutical comparability studies Protein structure along the order-disorder continuum Exploring protein dynamics space: the dynasome as the missing link between protein structure and function.A chemical group graph representation for efficient high-throughput analysis of atomistic protein simulations.Inferences from structural comparison: flexibility, secondary structure wobble and sequence alignment optimization.Implementation of 3D spatial indexing and compression in a large-scale molecular dynamics simulation database for rapid atomic contact detection Event detection and sub-state discovery from biomolecular simulations using higher-order statistics: application to enzyme adenylate kinase.DIVE: a data intensive visualization engine.New Dynamic Rotamer Libraries: Data-Driven Analysis of Side-Chain Conformational Propensities.Flexibility and Solvation of Amyloid-β Hydrophobic Core The Dynameomics rotamer library: amino acid side chain conformations and dynamics from comprehensive molecular dynamics simulations in water.Using simulations to provide the framework for experimental protein folding studies Designed α-sheet peptides inhibit amyloid formation by targeting toxic oligomers.Distance restraints from crosslinking mass spectrometry: mining a molecular dynamics simulation database to evaluate lysine-lysine distances Diverse effects on the native β-sheet of the human prion protein due to disease-associated mutations.Pathogenic mutations in the hydrophobic core of the human prion protein can promote structural instability and misfolding.Protein folds and protein folding.Wavelet Analysis of Protein Motion Remote thioredoxin recognition using evolutionary conservation and structural dynamics.Structural effects of the L145Q, V157F, and R282W cancer-associated mutations in the p53 DNA-binding core domain QAARM: quasi-anharmonic autoregressive model reveals molecular recognition pathways in ubiquitin The effect of context on the folding of β-hairpins.DCMS: A data analytics and management system for molecular simulation.Manifestations of native topology in the denatured state ensemble of Rhodopseudomonas palustris cytochrome c'.Ensembler: Enabling High-Throughput Molecular Simulations at the Superfamily Scale Structural consequences of mutations to the α-tocopherol transfer protein associated with the neurodegenerative disease ataxia with vitamin E deficiency An in silico algorithm for identifying stabilizing pockets in proteins: test case, the Y220C mutant of the p53 tumor suppressor protein.Information flow and protein dynamics: the interplay between nuclear magnetic resonance spectroscopy and molecular dynamics simulations.Insights from molecular dynamics simulations for computational protein design.Spatial Heat Maps from Fast Information Matching of Fast and Slow Degrees of Freedom: Application to Molecular Dynamics Simulations.Exploring the Dynamics of the TWIK-1 Channel.

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P2860

Dynameomics: a comprehensive database of protein dynamics.

http://www.wikidata.org/entity/Q33943177

description

2010 nî lūn-bûn

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2010 թուականի Մարտին հրատարակուած գիտական յօդուած

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2010 թվականի մարտին հրատարակված գիտական հոդված

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2010年の論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年论文

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name

Dynameomics: a comprehensive database of protein dynamics.

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Dynameomics: a comprehensive database of protein dynamics.

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Dynameomics: a comprehensive database of protein dynamics.

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Dynameomics: a comprehensive database of protein dynamics.

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Dynameomics: a comprehensive database of protein dynamics.

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Dynameomics: a comprehensive database of protein dynamics.

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J.STR.2010.01.012

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Dynameomics: a comprehensive database of protein dynamics.

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Alexander D Scouras

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Amanda L Jonsson

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Andrew M Simms

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David A C Beck

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Dennis Bromley

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Noah C Benson

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Peter C Anderson

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R Dustin Schaeffer

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P2860

The Protein Data Bank

A consensus view of fold space: combining SCOP, CATH, and the Dali Domain Dictionary

A consensus view of protein dynamics

Crystal structures of human 108V and 108M catechol O-methyltransferase

Targeted rescue of a destabilized mutant of p53 by an in silico screened drug

Principles of Ligand Binding within a Completely Buried Cavity in HIF2α PAS-B

VMD: visual molecular dynamics

SCOP: a structural classification of proteins database for the investigation of sequences and structures

Protein misfolding, functional amyloid, and human disease

Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability

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423-435

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scholarly article

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10.1016/J.STR.2010.01.012

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4

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18

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Marc van der Kamp

Steven J Rysavy

Rudesh D Toofanny

Valerie Daggett

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20399180

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