RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach - Wikidata - wikimedia - TriplyDB

RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach

RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach

http://www.wikidata.org/entity/Q33957523

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RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria Data-driven integration of genome-scale regulatory and metabolic network models The regulatory role of ferric uptake regulator (Fur) during anaerobic respiration of Shewanella piezotolerans WP3 Carbohydrate availability regulates virulence gene expression in Streptococcus suis Comparative genomics of transcriptional regulation of methionine metabolism in Proteobacteria Brucella BioR regulator defines a complex regulatory mechanism for bacterial biotin metabolism Genomic reconstruction of the transcriptional regulatory network in Bacillus subtilis RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics Global transcriptional control by glucose and carbon regulator CcpA in Clostridium difficile.Control of proteobacterial central carbon metabolism by the HexR transcriptional regulator: a case study in Shewanella oneidensis.Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus.The regulatory function of LexA is temperature-dependent in the deep-sea bacterium Shewanella piezotolerans WP3 RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes New family of tungstate-responsive transcriptional regulators in sulfate-reducing bacteria.Reconstruction of the Regulatory Network for Bacillus subtilis and Reconciliation with Gene Expression Data A novel bifunctional transcriptional regulator of riboflavin metabolism in Archaea CodY Regulates Thiol Peroxidase Expression as Part of the Pneumococcal Defense Mechanism against H2O2 Stress.Validating regulatory predictions from diverse bacteria with mutant fitness data.Comparative genomics and evolution of regulons of the LacI-family transcription factors.FITBAR: a web tool for the robust prediction of prokaryotic regulons.LdtR is a master regulator of gene expression in Liberibacter asiaticus.Network portal: a database for storage, analysis and visualization of biological networks.PdhR, the pyruvate dehydrogenase repressor, does not regulate lipoic acid synthesis.Functional metabolic map of Faecalibacterium prausnitzii, a beneficial human gut microbe.Computational analysis of riboswitch-based regulation Inference of the transcriptional regulatory network in Staphylococcus aureus by integration of experimental and genomics-based evidence.Bioinformatic characterization of the 4-Toluene Sulfonate Uptake Permease (TSUP) family of transmembrane proteins A Monte Carlo-based framework enhances the discovery and interpretation of regulatory sequence motifs JContextExplorer: a tree-based approach to facilitate cross-species genomic context comparison Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria.Redox-responsive repressor Rex modulates alcohol production and oxidative stress tolerance in Clostridium acetobutylicum.Comparative genomics of DtxR family regulons for metal homeostasis in Archaea Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria.Polysaccharides utilization in human gut bacterium Bacteroides thetaiotaomicron: comparative genomics reconstruction of metabolic and regulatory networks.Antiparallel and interlinked control of cellular iron levels by the Irr and RirA regulators of Agrobacterium tumefaciens A new regulatory mechanism for bacterial lipoic acid synthesis.An integrated approach to reconstructing genome-scale transcriptional regulatory networks GntR Family of Bacterial Transcription Factors and Their DNA Binding Motifs: Structure, Positioning and Co-Evolution.Reconstruction of novel transcription factor regulons through inference of their binding sites.Transcriptional regulation of central carbon and energy metabolism in bacteria by redox-responsive repressor Rex

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RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach

http://www.wikidata.org/entity/Q33957523

description

2010 nî lūn-bûn

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2010 թուականի Յունիսին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի հունիսին հրատարակված գիտական հոդված

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2010年の論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年论文

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name

RegPredict: an integrated syst ...... comparative genomics approach

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RegPredict: an integrated syst ...... comparative genomics approach

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type

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RegPredict: an integrated syst ...... comparative genomics approach

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RegPredict: an integrated syst ...... comparative genomics approach

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RegPredict: an integrated syst ...... comparative genomics approach

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RegPredict: an integrated syst ...... comparative genomics approach

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Nucleic Acids Research

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RegPredict: an integrated syst ...... comparative genomics approach

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Adam P Arkin

http://www.w3.org/2001/XMLSchema#string

Alexey E Kazakov

http://www.w3.org/2001/XMLSchema#string

Andrey A Mironov

http://www.w3.org/2001/XMLSchema#string

Dmitry A Rodionov

http://www.w3.org/2001/XMLSchema#string

Elena D Stavrovskaya

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Elena S Novichkova

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Inna Dubchak

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Mikhail S Gelfand

http://www.w3.org/2001/XMLSchema#string

Pavel S Novichkov

http://www.w3.org/2001/XMLSchema#string

P2860

Rfam: updates to the RNA families database

RegTransBase--a database of regulatory sequences and interactions in a wide range of prokaryotic genomes

A novel method for accurate operon predictions in all sequenced prokaryotes

Reconstruction of regulatory and metabolic pathways in metal-reducing delta-proteobacteria

Dissimilatory metabolism of nitrogen oxides in bacteria: comparative reconstruction of transcriptional networks

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

A comparative genomics approach to prediction of new members of regulons

CoryneRegNet 4.0 - A reference database for corynebacterial gene regulatory networks.

Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes.

Computational reconstruction of iron- and manganese-responsive transcriptional networks in alpha-proteobacteria

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W299-307

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scholarly article

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10.1093/NAR/GKQ531

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P433

Web Server issue

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38

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2010-06-11T00:00:00Z

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44668274

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20542910

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2896116

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