RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries. - Wikidata - wikimedia - TriplyDB

RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries.

RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries.

http://www.wikidata.org/entity/Q33966769

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Eukaryote-specific insertion elements control human ARGONAUTE slicer activity Genome-wide annotation and quantitation of translation by ribosome profiling The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments Can circulating miRNAs live up to the promise of being minimal invasive biomarkers in clinical settings?Archaeal Nucleic Acid Ligases and Their Potential in Biotechnology Not miR-ly micromanagers: the functions and regulatory networks of microRNAs in mammalian skin MicroRNA profiling: approaches and considerations Issues and prospects of microRNA-based biomarkers in blood and other body fluids Library construction for next-generation sequencing: overviews and challenges.RNA-binding proteins in neurodegeneration: Seq and you shall receive The "Observer Effect" in genome-wide surveys of protein-RNA interactions Detection of miRNAs with a nanopore single-molecule counter Substantial and robust changes in microRNA transcriptome support postnatal development of the hypothalamus in rat.Dysregulation of microRNA-219 promotes neurodegeneration through post-transcriptional regulation of tau Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis An Empirical Evaluation of Normalization Methods for MicroRNA Arrays in a Liposarcoma Study Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya.Deep-sequencing protocols influence the results obtained in small-RNA sequencing Future microfluidic and nanofluidic modular platforms for nucleic acid liquid biopsy in precision medicine.Toward reliable biomarker signatures in the age of liquid biopsies - how to standardize the small RNA-Seq workflow 3' terminal diversity of MRP RNA and other human noncoding RNAs revealed by deep sequencing.Differences in microRNA detection levels are technology and sequence dependent miRspring: a compact standalone research tool for analyzing miRNA-seq data.Biases in small RNA deep sequencing data.Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization.Synthetic spike-in standards improve run-specific systematic error analysis for DNA and RNA sequencing.Directional RNA-seq reveals highly complex condition-dependent transcriptomes in E. coli K12 through accurate full-length transcripts assembling.Diversity and expression of microRNAs in the filarial parasite, Brugia malayi.Removing bias against short sequences enables northern blotting to better complement RNA-seq for the study of small RNAs Sources and Functions of Extracellular Small RNAs in Human Circulation.The Period protein homolog LIN-42 negatively regulates microRNA biogenesis in C. elegans.Importance of the RNA secondary structure for the relative accumulation of clustered viral microRNAs Distributed biotin-streptavidin transcription roadblocks for mapping cotranscriptional RNA folding.Modeling bias and variation in the stochastic processes of small RNA sequencing.miRNAs in the alga Chlamydomonas reinhardtii are not phylogenetically conserved and play a limited role in responses to nutrient deprivation.Barcoding bias in high-throughput multiplex sequencing of miRNA.Comparative RNA-sequencing analysis of myocardial and circulating small RNAs in human heart failure and their utility as biomarkers.RNA sequencing: from tag-based profiling to resolving complete transcript structure.Deep sequencing reveals predominant expression of miR-21 amongst the small non-coding RNAs in retinal microvascular endothelial cells.High-throughput multiplex sequencing of miRNA

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P2860

RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries.

http://www.wikidata.org/entity/Q33966769

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2011 թվականի հուլիսին հրատարակված գիտական հոդված

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2011年の論文

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2011年論文

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Aleksandra Mihailović

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Carolina Lin

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Daniel Holoch

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Jeffrey D Nusbaum

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John T G Pena

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Miguel Brown

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P2860

T4-induced RNA ligase joins single-stranded oligoribonucleotides

New methods for next generation sequencing based microRNA expression profiling

Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing

MicroRNAs: target recognition and regulatory functions

Purification and properties of bacteriophage T4-induced RNA ligase

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

A mammalian microRNA expression atlas based on small RNA library sequencing

Transcripts targeted by the microRNA-16 family cooperatively regulate cell cycle progression

Isolation and characterization of a thermostable RNA ligase 1 from a Thermus scotoductus bacteriophage TS2126 with good single-stranded DNA ligation properties

Structure and mechanism of RNA ligase

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10.1261/RNA.2799511

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