Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme. - Wikidata - wikimedia - TriplyDB

Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme.

Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme.

http://www.wikidata.org/entity/Q33977896

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Biological phosphoryl-transfer reactions: understanding mechanism and catalysis NMR structure of the A730 loop of the Neurospora VS ribozyme: insights into the formation of the active site A Transition-State Interaction Shifts Nucleobase Ionization toward Neutrality To Facilitate Small Ribozyme Catalysis NMR Localization of Divalent Cations at the Active Site of the Neurospora VS Ribozyme Provides Insights into RNA–Metal-Ion Interactions Crystal structure and mechanistic investigation of the twister ribozyme Chemistry and Biology of Self-Cleaving Ribozymes The glmS ribozyme cofactor is a general acid-base catalyst Use of a coenzyme by the glmS ribozyme-riboswitch suggests primordial expansion of RNA chemistry by small molecules Do the hairpin and VS ribozymes share a common catalytic mechanism based on general acid-base catalysis? A critical assessment of available experimental data.Crystal structure of the Varkud satellite ribozyme.A general and efficient approach for the construction of RNA oligonucleotides containing a 5'-phosphorothiolate linkage.Molecular recognition of 6'-N-5-hexynoate kanamycin A and RNA 1x1 internal loops containing CA mismatches.Role of the active site guanine in the glmS ribozyme self-cleavage mechanism: quantum mechanical/molecular mechanical free energy simulations Base ionization and ligand binding: how small ribozymes and riboswitches gain a foothold in a protein world.Heavy atom labeled nucleotides for measurement of kinetic isotope effects Role of pK(a) of nucleobases in the origins of chemical evolution Multiscale methods for computational RNA enzymology.Catalysis by the nucleolytic ribozymes.Synthesis, properties, and applications of oligonucleotides containing an RNA dinucleotide phosphorothiolate linkage.Nucleic acid catalysis: metals, nucleobases, and other cofactors.Insights into RNA structure and dynamics from recent NMR and X-ray studies of the Neurospora Varkud satellite ribozyme.Structural and Biochemical Properties of Novel Self-Cleaving Ribozymes.The structure of a nucleolytic ribozyme that employs a catalytic metal ion.Charged nucleobases and their potential for RNA catalysis.Rational engineering of the Neurospora VS ribozyme to allow substrate recognition via different kissing-loop interactions.Crystal structure of Pistol, a class of self-cleaving ribozyme.General acid-base catalysis mediated by nucleobases in the hairpin ribozyme.A remarkably stable kissing-loop interaction defines substrate recognition by the Neurospora Varkud Satellite ribozyme.Substrate and enzyme functional groups contribute to translational quality control by bacterial prolyl-tRNA synthetase.Synthesis and incorporation of the phosphoramidite derivative of 2'-O-photocaged 3'-s-thioguanosine into oligoribonucleotides: substrate for probing the mechanism of RNA catalysis.The NMR structure of the II-III-VI three-way junction from the Neurospora VS ribozyme reveals a critical tertiary interaction and provides new insights into the global ribozyme structure.Helix-length compensation studies reveal the adaptability of the VS ribozyme architecture.Additional roles of a peripheral loop-loop interaction in the Neurospora VS ribozyme.Mechanisms of RNA catalysis.A Stably Protonated Adenine Nucleotide with a Highly Shifted pKa Value Stabilizes the Tertiary Structure of a GTP-Binding RNA Aptamer.The synthesis, conformation and hydrolytic stability of an N,S-bridging thiophosphoramidate analogue of thymidylyl-3′,5′-thymidine

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Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme.

http://www.wikidata.org/entity/Q33977896

description

2010 nî lūn-bûn

@nan

2010 թուականի Յունիսին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի հունիսին հրատարակված գիտական հոդված

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2010年の論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年论文

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name

Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme.

@ast

Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme.

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type

label

Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme.

@ast

Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme.

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prefLabel

Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme.

@ast

Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme.

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PNAS.1004255107

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Proceedings of the National Academy of Sciences of the United States of America

P1476

Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme.

@en

P2093

David M J Lilley

http://www.w3.org/2001/XMLSchema#string

John K Frederiksen

http://www.w3.org/2001/XMLSchema#string

Joseph A Piccirilli

http://www.w3.org/2001/XMLSchema#string

Jun Lu

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Nan-Sheng Li

http://www.w3.org/2001/XMLSchema#string

Timothy J Wilson

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P2860

Solution structure of the loop B domain from the hairpin ribozyme

Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis

Transition state stabilization by a catalytic RNA

NMR structure of the active conformation of the Varkud satellite ribozyme cleavage site

Crystal structure of a hepatitis delta virus ribozyme

The three-dimensional structure of ribonuclease-S. Interpretation of an electron density map at a nominal resolution of 2 A

Structural basis of glmS ribozyme activation by glucosamine-6-phosphate

Functional involvement of G8 in the hairpin ribozyme cleavage mechanism.

Mechanistic considerations for general acid-base catalysis by RNA: revisiting the mechanism of the hairpin ribozyme.

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11751-11756

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107

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