De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity
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Transcriptome Analysis in Domesticated Species: Challenges and StrategiesSingle-nucleotide polymorphism markers from de-novo assembly of the pomegranate transcriptome reveal germplasm genetic diversityDe novo transcriptome sequence assembly and identification of AP2/ERF transcription factor related to abiotic stress in parsley (Petroselinum crispum)De novo characterization of fall dormant and nondormant alfalfa (Medicago sativa L.) leaf transcriptome and identification of candidate genes related to fall dormancyDe Novo Transcriptome Assembly in Firmiana danxiaensis, a Tree Species Endemic to the Danxia LandformDevelopment of high-throughput SNP-based genotyping in Acacia auriculiformis x A. mangium hybrids using short-read transcriptome dataMOSAIK: a hash-based algorithm for accurate next-generation sequencing short-read mapping.Characterization of Withania somnifera leaf transcriptome and expression analysis of pathogenesis-related genes during salicylic acid signaling.Transcriptome analysis of thermogenic Arum concinnatum reveals the molecular components of floral scent production.Why assembling plant genome sequences is so challengingRapid development of microsatellite markers for Callosobruchus chinensis using Illumina paired-end sequencing.Comparison of the transcriptomes of ginger (Zingiber officinale Rosc.) and mango ginger (Curcuma amada Roxb.) in response to the bacterial wilt infectionDe novo leaf and root transcriptome analysis identified novel genes involved in steroidal sapogenin biosynthesis in Asparagus racemosus.De novo assembly and characterisation of the transcriptome during seed development, and generation of genic-SSR markers in peanut (Arachis hypogaea L.).Cutoffs and k-mers: implications from a transcriptome study in allopolyploid plants.CarrotDB: a genomic and transcriptomic database for carrot.Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.).De-novo transcriptome sequencing of a normalized cDNA pool from influenza infected ferrets.De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.).Characterization of the kidney transcriptome of the South American olive mouse Abrothrix olivacea.Mapping genes governing flower architecture and pollen development in a double mutant population of carrot.Quantitative RNA-Seq analysis in non-model species: assessing transcriptome assemblies as a scaffold and the utility of evolutionary divergent genomic reference speciesDe novo sequencing and transcriptome analysis of the central nervous system of mollusc Lymnaea stagnalis by deep RNA sequencingNew insights into domestication of carrot from root transcriptome analyses.Next generation sequencing and de novo transcriptome analysis of Costus pictus D. Don, a non-model plant with potent anti-diabetic properties.An RNA-Seq transcriptome analysis of orthophosphate-deficient white lupin reveals novel insights into phosphorus acclimation in plants.A NGS approach to the encrusting Mediterranean sponge Crella elegans (Porifera, Demospongiae, Poecilosclerida): transcriptome sequencing, characterization and overview of the gene expression along three life cycle stages.De Novo transcriptome assembly (NGS) of Curcuma longa L. rhizome reveals novel transcripts related to anticancer and antimalarial terpenoids.De novo assembly, gene annotation and marker development using Illumina paired-end transcriptome sequences in celery (Apium graveolens L.).Transcriptome analysis of Thapsia laciniata Rouy provides insights into terpenoid biosynthesis and diversity in ApiaceaeTranscriptome resources for the white-footed mouse (Peromyscus leucopus): new genomic tools for investigating ecologically divergent urban and rural populations.SNP discovery by illumina-based transcriptome sequencing of the olive and the genetic characterization of Turkish olive genotypes revealed by AFLP, SSR and SNP markersIdentification of single nucleotide polymorphisms from the transcriptome of an organism with a whole genome duplication.Characterization and high cross-species transferability of microsatellite markers from the floral transcriptome of Aspidistra saxicola (Asparagaceae).Characterization of centromeric histone H3 (CENH3) variants in cultivated and wild carrots (Daucus sp.).De novo transcriptome assembly of pummelo and molecular marker developmentA gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.Comparative transcriptome analysis of latex from rubber tree clone CATAS8-79 and PR107 reveals new cues for the regulation of latex regeneration and duration of latex flow.Optimal assembly strategies of transcriptome related to ploidies of eukaryotic organismsEvolution of substrate recognition sites (SRSs) in cytochromes P450 from Apiaceae exemplified by the CYP71AJ subfamily.
P2860
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P2860
De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity
description
2011 nî lūn-bûn
@nan
2011 թուականի Օգոստոսին հրատարակուած գիտական յօդուած
@hyw
2011 թվականի օգոստոսին հրատարակված գիտական հոդված
@hy
2011年の論文
@ja
2011年論文
@yue
2011年論文
@zh-hant
2011年論文
@zh-hk
2011年論文
@zh-mo
2011年論文
@zh-tw
2011年论文
@wuu
name
De novo assembly and character ...... markers, and genetic diversity
@ast
De novo assembly and character ...... markers, and genetic diversity
@en
type
label
De novo assembly and character ...... markers, and genetic diversity
@ast
De novo assembly and character ...... markers, and genetic diversity
@en
prefLabel
De novo assembly and character ...... markers, and genetic diversity
@ast
De novo assembly and character ...... markers, and genetic diversity
@en
P2093
P2860
P50
P356
P1433
P1476
De novo assembly and character ...... markers, and genetic diversity
@en
P2093
Allen Van Deynze
Marta Matvienko
Massimo Iorizzo
Pablo F Cavagnaro
P2860
P2888
P356
10.1186/1471-2164-12-389
P407
P577
2011-08-02T00:00:00Z
P5875
P6179
1041182354