Efficient counting of k-mers in DNA sequences using a bloom filter.
about
Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data.Next-generation sequence assembly: four stages of data processing and computational challengesPaPrBaG: A machine learning approach for the detection of novel pathogens from NGS data.These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure.ntCard: a streaming algorithm for cardinality estimation in genomics data.RNA-Skim: a rapid method for RNA-Seq quantification at transcript level.Efficient detection of viral transmissions with Next-Generation Sequencing data.Fast lossless compression via cascading Bloom filters.CASPER: context-aware scheme for paired-end reads from high-throughput amplicon sequencing.Exploiting sparseness in de novo genome assemblyBLESS: bloom filter-based error correction solution for high-throughput sequencing reads.Lighter: fast and memory-efficient sequencing error correction without counting.Disk-based k-mer counting on a PC.Compact representation of k-mer de Bruijn graphs for genome read assembly.Diminishing return for increased Mappability with longer sequencing reads: implications of the k-mer distributions in the human genomeTurtle: identifying frequent k-mers with cache-efficient algorithms.Pollux: platform independent error correction of single and mixed genomes.DIDA: Distributed Indexing Dispatched Alignment.Subtractive assembly for comparative metagenomics, and its application to type 2 diabetes metagenomes.Empirical estimation of sequencing error rates using smoothing splinesCompacting de Bruijn graphs from sequencing data quickly and in low memoryScaling metagenome sequence assembly with probabilistic de Bruijn graphs.Strategies for complete plastid genome sequencing.Compression of next-generation sequencing reads aided by highly efficient de novo assembly.Fast search of thousands of short-read sequencing experimentsDraft Genome of Toxocara canis, a Pathogen Responsible for Visceral Larva Migrans.A massively parallel strategy for STR marker development, capture, and genotypingGerbil: a fast and memory-efficient k-mer counter with GPU-supportDSK: k-mer counting with very low memory usage.Alignment-free inference of hierarchical and reticulate phylogenomic relationships.Computational pan-genomics: status, promises and challenges.The present and future of de novo whole-genome assembly.TwoPaCo: an efficient algorithm to build the compacted de Bruijn graph from many complete genomes.KCMBT: a k-mer Counter based on Multiple Burst Trees.BFC: correcting Illumina sequencing errors.KMC 2: fast and resource-frugal k-mer counting.Computing Platforms for Big Biological Data Analytics: Perspectives and Challenges.kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity.fastBMA: scalable network inference and transitive reduction.Neptune: a bioinformatics tool for rapid discovery of genomic variation in bacterial populations.
P2860
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P2860
Efficient counting of k-mers in DNA sequences using a bloom filter.
description
2011 nî lūn-bûn
@nan
2011 թուականի Օգոստոսին հրատարակուած գիտական յօդուած
@hyw
2011 թվականի օգոստոսին հրատարակված գիտական հոդված
@hy
2011年の論文
@ja
2011年論文
@yue
2011年論文
@zh-hant
2011年論文
@zh-hk
2011年論文
@zh-mo
2011年論文
@zh-tw
2011年论文
@wuu
name
Efficient counting of k-mers in DNA sequences using a bloom filter.
@ast
Efficient counting of k-mers in DNA sequences using a bloom filter.
@en
type
label
Efficient counting of k-mers in DNA sequences using a bloom filter.
@ast
Efficient counting of k-mers in DNA sequences using a bloom filter.
@en
prefLabel
Efficient counting of k-mers in DNA sequences using a bloom filter.
@ast
Efficient counting of k-mers in DNA sequences using a bloom filter.
@en
P2860
P356
P1433
P1476
Efficient counting of k-mers in DNA sequences using a bloom filter.
@en
P2093
Jonathan K Pritchard
P2860
P2888
P356
10.1186/1471-2105-12-333
P50
P577
2011-08-10T00:00:00Z
P5875
P6179
1041214578