Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis.
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Considerations For Optimizing Microbiome Analysis Using a Marker GeneDiversity and Habitat Preferences of Cultivated and Uncultivated Aerobic Methanotrophic Bacteria Evaluated Based on pmoA as Molecular MarkerEscherichia coli O157:H7 super-shedder and non-shedder feedlot steers harbour distinct fecal bacterial communitiesITScan: a web-based analysis tool for Internal Transcribed Spacer (ITS) sequencesActinobacterial Diversity in Volcanic Caves and Associated Geomicrobiological InteractionsElectrosynthesis of commodity chemicals by an autotrophic microbial communityMicrobiomes of Muricea californica and M. fruticosa: Comparative Analyses of Two Co-occurring Eastern Pacific OctocoralsSurprisingly extensive mixed phylogenetic and ecological signals among bacterial Operational Taxonomic UnitsDevelopment of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.Microbiome data distinguish patients with Clostridium difficile infection and non-C. difficile-associated diarrhea from healthy controls.Interpreting 16S metagenomic data without clustering to achieve sub-OTU resolution.Microbial communities reflect temporal changes in cyanobacterial composition in a shallow ephemeral freshwater lake.Stochastic neutral modelling of the Gut Microbiota's relative species abundance from next generation sequencing data.MSClust: A Multi-Seeds based Clustering algorithm for microbiome profiling using 16S rRNA sequence.A general species delimitation method with applications to phylogenetic placements.Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies.The effect of PPI use on human gut microbiota and weight loss in patients undergoing laparoscopic Roux-en-Y gastric bypass.Characterization of early microbial communities on volcanic deposits along a vegetation gradient on the island of Miyake, Japan.A tool kit for quantifying eukaryotic rRNA gene sequences from human microbiome samples.Evaluating the accuracy of amplicon-based microbiome computational pipelines on simulated human gut microbial communitiesImpact of enzymatic digestion on bacterial community composition in CF airway samples.Reducing Viability Bias in Analysis of Gut Microbiota in Preterm Infants at Risk of NEC and Sepsis.From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing dataThe Bacterial Ecosystem of Mother's Milk and Infant's Mouth and Gut.Epidemic Clostridium difficile strains demonstrate increased competitive fitness compared to nonepidemic isolatesThe dynamics of a family's gut microbiota reveal variations on a theme.Fungal-bacterial interactions and their relevance to oral health: linking the clinic and the bench.Effect of sodium bisulfite injection on the microbial community composition in a brackish-water-transporting pipeline.DNA barcoding of Bemisia tabaci complex (Hemiptera: Aleyrodidae) reveals southerly expansion of the dominant whitefly species on cotton in PakistanCompositions of microbial communities associated with oil and water in a mesothermic oil field.Two decades of describing the unseen majority of aquatic microbial diversity.Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequencesReducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies.Two-stage clustering (TSC): a pipeline for selecting operational taxonomic units for the high-throughput sequencing of PCR amplicons.Novel high-rank phylogenetic lineages within a sulfur spring (Zodletone Spring, Oklahoma), revealed using a combined pyrosequencing-sanger approachThe bacterial community structure of hydrocarbon-polluted marine environments as the basis for the definition of an ecological index of hydrocarbon exposure.Characterization of the active microbiotas associated with honey bees reveals healthier and broader communities when colonies are genetically diverse.Using high throughput sequencing to explore the biodiversity in oral bacterial communitiesAlkane biodegradation genes from chronically polluted subantarctic coastal sediments and their shifts in response to oil exposure.Stabilization of the murine gut microbiome following weaning
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P2860
Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis.
description
2011 nî lūn-bûn
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2011 թուականի Մարտին հրատարակուած գիտական յօդուած
@hyw
2011 թվականի մարտին հրատարակված գիտական հոդված
@hy
2011年の論文
@ja
2011年論文
@yue
2011年論文
@zh-hant
2011年論文
@zh-hk
2011年論文
@zh-mo
2011年論文
@zh-tw
2011年论文
@wuu
name
Assessing and improving method ...... S rRNA gene sequence analysis.
@ast
Assessing and improving method ...... S rRNA gene sequence analysis.
@en
Assessing and improving method ...... S rRNA gene sequence analysis.
@nl
type
label
Assessing and improving method ...... S rRNA gene sequence analysis.
@ast
Assessing and improving method ...... S rRNA gene sequence analysis.
@en
Assessing and improving method ...... S rRNA gene sequence analysis.
@nl
prefLabel
Assessing and improving method ...... S rRNA gene sequence analysis.
@ast
Assessing and improving method ...... S rRNA gene sequence analysis.
@en
Assessing and improving method ...... S rRNA gene sequence analysis.
@nl
P2860
P356
P1476
Assessing and improving method ...... S rRNA gene sequence analysis.
@en
P2093
Sarah L Westcott
P2860
P304
P356
10.1128/AEM.02810-10
P407
P577
2011-03-18T00:00:00Z