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A hybrid approach for the automated finishing of bacterial genomes

A hybrid approach for the automated finishing of bacterial genomes

http://www.wikidata.org/entity/Q34032597

about

Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases A Benchmark Study on Error Assessment and Quality Control of CCS Reads Derived from the PacBio RS PacBio Sequencing and Its Applications Molecular tools in understanding the evolution of Vibrio cholerae Genetic variation and the de novo assembly of human genomes The advantages of SMRT sequencing Irreconcilable differences: divorcing geographic mutation and recombination rates within a global MRSA clone FPSAC: fast phylogenetic scaffolding of ancient contigs.Genomic science in understanding cholera outbreaks and evolution of Vibrio cholerae as a human pathogen.Genome annotation provides insight into carbon monoxide and hydrogen metabolism in Rubrivivax gelatinosus.Enhanced 5-methylcytosine detection in single-molecule, real-time sequencing via Tet1 oxidation.The gut microbiome in human neurological disease: A review.Characterizing and measuring bias in sequence data.Third generation sequencing technologies applied to diagnostic microbiology: benefits and challenges in applications and data analysis.Implementation and Data Analysis of Tn-seq, Whole-Genome Resequencing, and Single-Molecule Real-Time Sequencing for Bacterial Genetics.Ragout-a reference-assisted assembly tool for bacterial genomes.Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia Value of a newly sequenced bacterial genome Reducing assembly complexity of microbial genomes with single-molecule sequencing Interpreting Microbial Biosynthesis in the Genomic Age: Biological and Practical Considerations.FGAP: an automated gap closing tool.Decoding long nanopore sequencing reads of natural DNA Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes ILP-based maximum likelihood genome scaffolding.Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences.Evolutionary dynamics of Vibrio cholerae O1 following a single-source introduction to Haiti.Analysis of a unique Clostridium botulinum strain from the Southern hemisphere producing a novel type E botulinum neurotoxin subtype.Denoising DNA deep sequencing data-high-throughput sequencing errors and their correction.Potential impact on kidney infection: a whole-genome analysis of Leptospira santarosai serovar Shermani.Chloroplast genome of Aconitum barbatum var. puberulum (Ranunculaceae) derived from CCS reads using the PacBio RS platform.Complete Sequences of Six IncA/C Plasmids of Multidrug-Resistant Salmonella enterica subsp. enterica Serotype Newport Completing bacterial genome assemblies: strategy and performance comparisons.Detecting epigenetic motifs in low coverage and metagenomics settings.Signature gene expression reveals novel clues to the molecular mechanisms of dimorphic transition in Penicillium marneffei.Population-Sequencing as a Biomarker for Sample Characterization.Assembly and diploid architecture of an individual human genome via single-molecule technologies.Complete chloroplast genome sequence of MD-2 pineapple and its comparative analysis among nine other plants from the subclass Commelinidae.Hybrid de novo tandem repeat detection using short and long reads.De novo assembly of Dekkera bruxellensis: a multi technology approach using short and long-read sequencing and optical mapping Evaluation and Validation of Assembling Corrected PacBio Long Reads for Microbial Genome Completion via Hybrid Approaches.

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A hybrid approach for the automated finishing of bacterial genomes

http://www.wikidata.org/entity/Q34032597

description

2012 nî lūn-bûn

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2012 թուականի Յուլիսին հրատարակուած գիտական յօդուած

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2012 թվականի հուլիսին հրատարակված գիտական հոդված

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2012年の論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年论文

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name

A hybrid approach for the automated finishing of bacterial genomes

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A hybrid approach for the automated finishing of bacterial genomes

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A hybrid approach for the automated finishing of bacterial genomes

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type

label

A hybrid approach for the automated finishing of bacterial genomes

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A hybrid approach for the automated finishing of bacterial genomes

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A hybrid approach for the automated finishing of bacterial genomes

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prefLabel

A hybrid approach for the automated finishing of bacterial genomes

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A hybrid approach for the automated finishing of bacterial genomes

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A hybrid approach for the automated finishing of bacterial genomes

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Nature Biotechnology

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A hybrid approach for the automated finishing of bacterial genomes

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Aaron Klammer

http://www.w3.org/2001/XMLSchema#string

Ali Bashir

http://www.w3.org/2001/XMLSchema#string

Amruta Joshi

http://www.w3.org/2001/XMLSchema#string

Brianna LaMay

http://www.w3.org/2001/XMLSchema#string

Brigid M Davis

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Chen-Shan Chin

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Cheryl L Tarr

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Dale Webster

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David Hsu

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Ellen Paxinos

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P2860

A note on two problems in connexion with graphs

Open-Source Genomic Analysis of Shiga-Toxin–Producing E. coli O104:H4

Genome sequencing in microfabricated high-density picolitre reactors

An Eulerian path approach to DNA fragment assembly

De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae

De novo assembly of human genomes with massively parallel short read sequencing

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

ARACHNE: a whole-genome shotgun assembler

Versatile and open software for comparing large genomes

Sequencing technologies - the next generation

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701-707

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scholarly article

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10.1038/NBT.2288

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7

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30

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Andrew Kasarskis

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2012-07-01T00:00:00Z

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228102547

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22750883

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3731737

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