Improved computational target site prediction for pentatricopeptide repeat RNA editing factors. - Wikidata - wikimedia - TriplyDB

Improved computational target site prediction for pentatricopeptide repeat RNA editing factors.

Improved computational target site prediction for pentatricopeptide repeat RNA editing factors.

http://www.wikidata.org/entity/Q34037172

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Mechanistic and Structural Studies of Protein-Only RNase P Compared to Ribonucleoproteins Reveal the Two Faces of the Same Enzymatic Activity Engineering RNA-binding proteins with diverse activities Structural basis for RNA recognition by a dimeric PPR-protein complex An artificial PPR scaffold for programmable RNA recognition The design and structural characterization of a synthetic pentatricopeptide repeat protein The Pet309 pentatricopeptide repeat motifs mediate efficient binding to the mitochondrial COX1 transcript in yeast.RNA Editing and Its Molecular Mechanism in Plant Organelles The Propensity of Pentatricopeptide Repeat Genes to Evolve into Restorers of Cytoplasmic Male Sterility Use of chemical modification and mass spectrometry to identify substrate-contacting sites in proteinaceous RNase P, a tRNA processing enzyme Redefining the structural motifs that determine RNA binding and RNA editing by pentatricopeptide repeat proteins in land plants.The Schizosaccharomyces pombe PPR protein Ppr10 associates with a novel protein Mpa1 and acts as a mitochondrial translational activator.The pentatricopeptide repeat protein MTSF2 stabilizes a nad1 precursor transcript and defines the 3΄ end of its 5΄-half intron.Cytidine deaminase motifs within the DYW domain of two pentatricopeptide repeat-containing proteins are required for site-specific chloroplast RNA editing.A conserved glutamate residue in the C-terminal deaminase domain of pentatricopeptide repeat proteins is required for RNA editing activity.The DYW Subgroup PPR Protein MEF35 Targets RNA Editing Sites in the Mitochondrial rpl16, nad4 and cob mRNAs in Arabidopsis thaliana.Frequent chloroplast RNA editing in early-branching flowering plants: pilot studies on angiosperm-wide coexistence of editing sites and their nuclear specificity factors aPPRove: An HMM-Based Method for Accurate Prediction of RNA-Pentatricopeptide Repeat Protein Binding Events.In Arabidopsis thaliana distinct alleles encoding mitochondrial RNA PROCESSING FACTOR 4 support the generation of additional 5' termini of ccmB transcripts.A genome-wide identification and analysis of the DYW-deaminase genes in the pentatricopeptide repeat gene family in cotton (Gossypium spp.).De-coding and re-coding RNA recognition by PUF and PPR repeat proteins.The PPR-SMR protein PPR53 enhances the stability and translation of specific chloroplast RNAs in maize A PPR protein in the PLS subfamily stabilizes the 5'-end of processed rpl16 mRNAs in maize chloroplasts.Distinct role of Arabidopsis mitochondrial P-type pentatricopeptide repeat protein-modulating editing protein, PPME, in nad1 RNA editing Engineering reprogrammable RNA-binding proteins for study and manipulation of the transcriptome.Biophysical analysis of Arabidopsis protein-only RNase P alone and in complex with tRNA provides a refined model of tRNA binding.Mitochondrial RNA editing PPR proteins can tolerate protein tags at E as well as at DYW domain termini.What is hot in plant mitochondria?A Single-Target Mitochondrial RNA Editing Factor of Funaria hygrometrica Can Fully Reconstitute RNA Editing at Two Sites in Physcomitrella patens.Functional diversity of Arabidopsis organelle-localized RNA-recognition motif-containing proteins.Functional analysis of the Arabidopsis thaliana CHLOROPLAST BIOGENESIS 19 pentatricopeptide repeat editing protein.Spontaneous dominant mutations in chlamydomonas highlight ongoing evolution by gene diversification.Predictable alteration of sequence recognition by RNA editing factors from Arabidopsis.CRP1 Protein: (dis)similarities between Arabidopsis thaliana and Zea mays.The solution structure of the pentatricopeptide repeat protein PPR10 upon binding atpH RNA.PPR-SMR protein SOT1 has RNA endonuclease activity.Chloroplast RNA editing going extreme: more than 3400 events of C-to-U editing in the chloroplast transcriptome of the lycophyte Selaginella uncinata.A protein with an unusually short PPR domain, MEF8, affects editing at over 60 Arabidopsis mitochondrial C targets of RNA editing.The longest mitochondrial RNA editing PPR protein MEF12 in Arabidopsis thaliana requires the full-length E domain.Pentatricopeptide repeat proteins: a set of modular RNA-specific binders massively used for organelle gene expression.Selective homo- and heteromer interactions between the multiple organellar RNA editing factor (MORF) proteins in Arabidopsis thaliana.

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P2860

Improved computational target site prediction for pentatricopeptide repeat RNA editing factors.

http://www.wikidata.org/entity/Q34037172

description

2013 nî lūn-bûn

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2013 թուականի Յունիսին հրատարակուած գիտական յօդուած

@hyw

2013 թվականի հունիսին հրատարակված գիտական հոդված

@hy

2013年の論文

@ja

2013年論文

@yue

2013年論文

@zh-hant

2013年論文

@zh-hk

2013年論文

@zh-mo

2013年論文

@zh-tw

2013年论文

@wuu

name

Improved computational target ...... de repeat RNA editing factors.

@ast

Improved computational target ...... de repeat RNA editing factors.

@en

Improved computational target ...... de repeat RNA editing factors.

@nl

type

label

Improved computational target ...... de repeat RNA editing factors.

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Improved computational target ...... de repeat RNA editing factors.

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Improved computational target ...... de repeat RNA editing factors.

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prefLabel

Improved computational target ...... de repeat RNA editing factors.

@ast

Improved computational target ...... de repeat RNA editing factors.

@en

Improved computational target ...... de repeat RNA editing factors.

@nl

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JOURNAL.PONE.0065343

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Improved computational target ...... de repeat RNA editing factors.

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Anja Zehrmann

http://www.w3.org/2001/XMLSchema#string

Axel Brennicke

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Knut Graichen

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Mizuki Takenaka

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P2860

Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis

Reverse genetic screening identifies five E-class PPR proteins involved in RNA editing in mitochondria of Arabidopsis thaliana

WebLogo: A Sequence Logo Generator

Breaking the code of DNA binding specificity of TAL-type III effectors

The PPR motif - a TPR-related motif prevalent in plant organellar proteins.

A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins.

Elucidation of the RNA recognition code for pentatricopeptide repeat proteins involved in organelle RNA editing in plants.

The E-class PPR protein MEF3 of Arabidopsis thaliana can also function in mitochondrial RNA editing with an additional DYW domain.

Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution.

Contiguous RNA editing sites in the mitochondrial nad1 transcript of Arabidopsis thaliana are recognized by different proteins.

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scholarly article

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