Improved computational target site prediction for pentatricopeptide repeat RNA editing factors.
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Mechanistic and Structural Studies of Protein-Only RNase P Compared to Ribonucleoproteins Reveal the Two Faces of the Same Enzymatic ActivityEngineering RNA-binding proteins with diverse activitiesStructural basis for RNA recognition by a dimeric PPR-protein complexAn artificial PPR scaffold for programmable RNA recognitionThe design and structural characterization of a synthetic pentatricopeptide repeat proteinThe Pet309 pentatricopeptide repeat motifs mediate efficient binding to the mitochondrial COX1 transcript in yeast.RNA Editing and Its Molecular Mechanism in Plant OrganellesThe Propensity of Pentatricopeptide Repeat Genes to Evolve into Restorers of Cytoplasmic Male SterilityUse of chemical modification and mass spectrometry to identify substrate-contacting sites in proteinaceous RNase P, a tRNA processing enzymeRedefining the structural motifs that determine RNA binding and RNA editing by pentatricopeptide repeat proteins in land plants.The Schizosaccharomyces pombe PPR protein Ppr10 associates with a novel protein Mpa1 and acts as a mitochondrial translational activator.The pentatricopeptide repeat protein MTSF2 stabilizes a nad1 precursor transcript and defines the 3΄ end of its 5΄-half intron.Cytidine deaminase motifs within the DYW domain of two pentatricopeptide repeat-containing proteins are required for site-specific chloroplast RNA editing.A conserved glutamate residue in the C-terminal deaminase domain of pentatricopeptide repeat proteins is required for RNA editing activity.The DYW Subgroup PPR Protein MEF35 Targets RNA Editing Sites in the Mitochondrial rpl16, nad4 and cob mRNAs in Arabidopsis thaliana.Frequent chloroplast RNA editing in early-branching flowering plants: pilot studies on angiosperm-wide coexistence of editing sites and their nuclear specificity factorsaPPRove: An HMM-Based Method for Accurate Prediction of RNA-Pentatricopeptide Repeat Protein Binding Events.In Arabidopsis thaliana distinct alleles encoding mitochondrial RNA PROCESSING FACTOR 4 support the generation of additional 5' termini of ccmB transcripts.A genome-wide identification and analysis of the DYW-deaminase genes in the pentatricopeptide repeat gene family in cotton (Gossypium spp.).De-coding and re-coding RNA recognition by PUF and PPR repeat proteins.The PPR-SMR protein PPR53 enhances the stability and translation of specific chloroplast RNAs in maizeA PPR protein in the PLS subfamily stabilizes the 5'-end of processed rpl16 mRNAs in maize chloroplasts.Distinct role of Arabidopsis mitochondrial P-type pentatricopeptide repeat protein-modulating editing protein, PPME, in nad1 RNA editingEngineering reprogrammable RNA-binding proteins for study and manipulation of the transcriptome.Biophysical analysis of Arabidopsis protein-only RNase P alone and in complex with tRNA provides a refined model of tRNA binding.Mitochondrial RNA editing PPR proteins can tolerate protein tags at E as well as at DYW domain termini.What is hot in plant mitochondria?A Single-Target Mitochondrial RNA Editing Factor of Funaria hygrometrica Can Fully Reconstitute RNA Editing at Two Sites in Physcomitrella patens.Functional diversity of Arabidopsis organelle-localized RNA-recognition motif-containing proteins.Functional analysis of the Arabidopsis thaliana CHLOROPLAST BIOGENESIS 19 pentatricopeptide repeat editing protein.Spontaneous dominant mutations in chlamydomonas highlight ongoing evolution by gene diversification.Predictable alteration of sequence recognition by RNA editing factors from Arabidopsis.CRP1 Protein: (dis)similarities between Arabidopsis thaliana and Zea mays.The solution structure of the pentatricopeptide repeat protein PPR10 upon binding atpH RNA.PPR-SMR protein SOT1 has RNA endonuclease activity.Chloroplast RNA editing going extreme: more than 3400 events of C-to-U editing in the chloroplast transcriptome of the lycophyte Selaginella uncinata.A protein with an unusually short PPR domain, MEF8, affects editing at over 60 Arabidopsis mitochondrial C targets of RNA editing.The longest mitochondrial RNA editing PPR protein MEF12 in Arabidopsis thaliana requires the full-length E domain.Pentatricopeptide repeat proteins: a set of modular RNA-specific binders massively used for organelle gene expression.Selective homo- and heteromer interactions between the multiple organellar RNA editing factor (MORF) proteins in Arabidopsis thaliana.
P2860
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P2860
Improved computational target site prediction for pentatricopeptide repeat RNA editing factors.
description
2013 nî lūn-bûn
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2013 թուականի Յունիսին հրատարակուած գիտական յօդուած
@hyw
2013 թվականի հունիսին հրատարակված գիտական հոդված
@hy
2013年の論文
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2013年論文
@yue
2013年論文
@zh-hant
2013年論文
@zh-hk
2013年論文
@zh-mo
2013年論文
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2013年论文
@wuu
name
Improved computational target ...... de repeat RNA editing factors.
@ast
Improved computational target ...... de repeat RNA editing factors.
@en
Improved computational target ...... de repeat RNA editing factors.
@nl
type
label
Improved computational target ...... de repeat RNA editing factors.
@ast
Improved computational target ...... de repeat RNA editing factors.
@en
Improved computational target ...... de repeat RNA editing factors.
@nl
prefLabel
Improved computational target ...... de repeat RNA editing factors.
@ast
Improved computational target ...... de repeat RNA editing factors.
@en
Improved computational target ...... de repeat RNA editing factors.
@nl
P2093
P2860
P1433
P1476
Improved computational target ...... de repeat RNA editing factors.
@en
P2093
Anja Zehrmann
Axel Brennicke
Knut Graichen
Mizuki Takenaka
P2860
P304
P356
10.1371/JOURNAL.PONE.0065343
P407
P577
2013-06-06T00:00:00Z