EVOPRINTER, a multigenomic comparative tool for rapid identification of functionally important DNA - Wikidata - wikimedia - TriplyDB

EVOPRINTER, a multigenomic comparative tool for rapid identification of functionally important DNA

EVOPRINTER, a multigenomic comparative tool for rapid identification of functionally important DNA

http://www.wikidata.org/entity/Q34055643

about

Unique alterations of an ultraconserved non-coding element in the 3'UTR of ZIC2 in holoprosencephaly Computational prediction of essential genes in an unculturable endosymbiotic bacterium, Wolbachia of Brugia malayi Rapid detection and curation of conserved DNA via enhanced-BLAT and EvoPrinterHD analysis.Sequence conservation and combinatorial complexity of Drosophila neural precursor cell enhancers.Horizontal gene transfers link a human MRSA pathogen to contagious bovine mastitis bacteria TargetOrtho: a phylogenetic footprinting tool to identify transcription factor targets.Recombineering Hunchback identifies two conserved domains required to maintain neuroblast competence and specify early-born neuronal identity.The serum response factor and a putative novel transcription factor regulate expression of the immediate-early gene Arc/Arg3.1 in neurons.Molecular genetic analyses of polytene chromosome region 72A-D in Drosophila melanogaster reveal a gene desert in 72D Molecular genetic analysis of Chd3 and polytene chromosome region 76B-D in Drosophila melanogaster.Ind represses msh expression in the intermediate column of the Drosophila neuroectoderm, through direct interaction with upstream regulatory DNA.Lack of the ventral anterior homeodomain transcription factor VAX1 leads to induction of a second pituitary.The genetic analysis of functional connectomics in Drosophila Cis-regulatory complexity within a large non-coding region in the Drosophila genome Early phase of plasticity-related gene regulation and SRF dependent transcription in the hippocampus Functional analysis of conserved sequences within a temporally restricted neural precursor cell enhancer Flanking sequence context-dependent transcription factor binding in early Drosophila development.ELAV-mediated 3'-end processing of ewg transcripts is evolutionarily conserved despite sequence degeneration of the ELAV-binding site.NHR-23 dependent collagen and hedgehog-related genes required for molting.Genome-Wide Mapping of Collier In Vivo Binding Sites Highlights Its Hierarchical Position in Different Transcription Regulatory Networks.Engrailed cooperates directly with Extradenticle and Homothorax on a distinct class of homeodomain binding sites to repress sloppy paired.Homeostatic mechanisms for iron storage revealed by genetic manipulations and live imaging of Drosophila ferritin Hox proteins coordinate peripodial decapentaplegic expression to direct adult head morphogenesis in Drosophila.The cis-regulatory dynamics of the Drosophila CNS determinant castor are controlled by multiple sub-pattern enhancers.Phylogenetic footprinting analysis in the upstream regulatory regions of the Drosophila enhancer of split genes.Comparative evaluation of intron prediction methods and detection of plant genome annotation using intron length distributions.Flavivirus and Filovirus EvoPrinters: New alignment tools for the comparative analysis of viral evolution.The neural substrate of spectral preference in Drosophila.Intestinal stem cell overproliferation resulting from inactivation of the APC tumor suppressor requires the transcription cofactors Earthbound and Erect wing.The Drosophila nerfin-1 mRNA requires multiple microRNAs to regulate its spatial and temporal translation dynamics in the developing nervous system.Use of a Drosophila genome-wide conserved sequence database to identify functionally related cis-regulatory enhancers.Regulation of a duplicated locus: Drosophila sloppy paired is replete with functionally overlapping enhancers Identification of hunchback cis-regulatory DNA conferring temporal expression in neuroblasts and neurons.Ascl1 and Neurog2 form novel complexes and regulate Delta-like3 (Dll3) expression in the neural tube.Conserved sequence block clustering and flanking inter-cluster flexibility delineate enhancers that regulate nerfin-1 expression during Drosophila CNS development.cis-Decoder discovers constellations of conserved DNA sequences shared among tissue-specific enhancers.Dissecting sources of quantitative gene expression pattern divergence between Drosophila species.Transcriptional regulatory regions of gap43 needed in developing and regenerating retinal ganglion cells.Characterization of dFOXO binding sites upstream of the Insulin Receptor P2 promoter across the Drosophila phylogeny.Evidence for evolutionary constraints in Drosophila metal biology.

P2860

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P2860

EVOPRINTER, a multigenomic comparative tool for rapid identification of functionally important DNA

http://www.wikidata.org/entity/Q34055643

description

2005 nî lūn-bûn

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2005 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած

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2005 թվականի հոտեմբերին հրատարակված գիտական հոդված

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2005年の論文

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2005年学术文章

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2005年学术文章

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2005年学术文章

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2005年学术文章

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2005年学术文章

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2005年學術文章

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name

EVOPRINTER, a multigenomic com ...... of functionally important DNA

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Proceedings of the National Academy of Sciences of the United States of America

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EVOPRINTER, a multigenomic com ...... of functionally important DNA

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P2093

Alexander Kuzin

http://www.w3.org/2001/XMLSchema#string

Thomas Brody

http://www.w3.org/2001/XMLSchema#string

Ward F Odenwald

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Wayne Rasband

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P2860

Human MicroRNA targets

Neuroendocrine differentiation factor, IA-1, is a transcriptional repressor and contains a specific DNA-binding domain: identification of consensus IA-1 binding sequence

Dual role of the Smad4/DPC4 tumor suppressor in TGFbeta-inducible transcriptional complexes

NeuroD1/E47 regulates the E-box element of a novel zinc finger transcription factor, IA-1, in developing nervous system.

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

Identification of a human achaete-scute homolog highly expressed in neuroendocrine tumors

BLAT--the BLAST-like alignment tool

PhyME: a probabilistic algorithm for finding motifs in sets of orthologous sequences

MicroRNA targets in Drosophila

An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome

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14700-14705

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10.1073/PNAS.0506915102

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41

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102

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7561224

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16203978

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