Molecular dynamics simulations of peptides and proteins with amplified collective motions.
about
Coupling between catalytic site and collective dynamics: a requirement for mechanochemical activity of enzymesUnraveling low-resolution structural data of large biomolecules by constructing atomic models with experiment-targeted parallel cascade selection simulations.Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics.Computational model for protein unfolding simulation.iGNM: a database of protein functional motions based on Gaussian Network Model.Pre-existing soft modes of motion uniquely defined by native contact topology facilitate ligand binding to proteinsTowards the prediction of order parameters from molecular dynamics simulations in proteins.Instantaneous normal modes as an unforced reaction coordinate for protein conformational transitionsCharacterization of protein flexibility using small-angle x-ray scattering and amplified collective motion simulationsA directed essential dynamics simulation of peptide folding.Modeling protein conformational changes by iterative fitting of distance constraints using reoriented normal modes.Coarse-grained normal mode analysis in structural biology.Structural insights into HetR-PatS interaction involved in cyanobacterial pattern formation.SAXS-Oriented Ensemble Refinement of Flexible Biomolecules.Molecular dynamics: survey of methods for simulating the activity of proteins.Identification of motions in membrane proteins by elastic network models and their experimental validation.Mechanism of signal propagation upon retinal isomerization: insights from molecular dynamics simulations of rhodopsin restrained by normal modesEnd-point targeted molecular dynamics: large-scale conformational changes in potassium channels.Focused functional dynamics of supramolecules by use of a mixed-resolution elastic network model.Protein unfolding behavior studied by elastic network modelAnharmonic normal mode analysis of elastic network model improves the modeling of atomic fluctuations in protein crystal structures.Conformational transition pathways explored by Monte Carlo simulation integrated with collective modes.Polymorphism of the epidermal growth factor receptor extracellular ligand binding domain: the dimer interface depends on domain stabilization.Global transitions of proteins explored by a multiscale hybrid methodology: application to adenylate kinase.Coarse-graining protein structures with local multivariate features from molecular dynamicsNormal mode partitioning of Langevin dynamics for biomolecules.Direct observation of T4 lysozyme hinge-bending motion by fluorescence correlation spectroscopy.Enhanced sampling of molecular dynamics simulation of peptides and proteins by double coupling to thermal bath.Study, by use of coarse-grained models, of the functionally crucial residues and allosteric pathway of anesthetic regulation of the Gloeobacter violaceus ligand-gated ion channel.Hamiltonian replica exchange combined with elastic network analysis to enhance global domain motions in atomistic molecular dynamics simulations.
P2860
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P2860
Molecular dynamics simulations of peptides and proteins with amplified collective motions.
description
2003 nî lūn-bûn
@nan
2003 թուականի Յունիսին հրատարակուած գիտական յօդուած
@hyw
2003 թվականի հունիսին հրատարակված գիտական հոդված
@hy
2003年の論文
@ja
2003年論文
@yue
2003年論文
@zh-hant
2003年論文
@zh-hk
2003年論文
@zh-mo
2003年論文
@zh-tw
2003年论文
@wuu
name
Molecular dynamics simulations ...... amplified collective motions.
@ast
Molecular dynamics simulations ...... amplified collective motions.
@en
Molecular dynamics simulations ...... amplified collective motions.
@nl
type
label
Molecular dynamics simulations ...... amplified collective motions.
@ast
Molecular dynamics simulations ...... amplified collective motions.
@en
Molecular dynamics simulations ...... amplified collective motions.
@nl
prefLabel
Molecular dynamics simulations ...... amplified collective motions.
@ast
Molecular dynamics simulations ...... amplified collective motions.
@en
Molecular dynamics simulations ...... amplified collective motions.
@nl
P2093
P2860
P1433
P1476
Molecular dynamics simulations ...... amplified collective motions.
@en
P2093
Haiyan Liu
Zhiyong Zhang
P2860
P304
P356
10.1016/S0006-3495(03)75090-5
P407
P577
2003-06-01T00:00:00Z