Evaluating characteristics of de novo assembly software on 454 transcriptome data: a simulation approach
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Augmenting transcriptome assembly by combining de novo and genome-guided toolsTranscriptome characterisation of the ant Formica exsecta with new insights into the evolution of desaturase genes in social hymenopteraDiversity of conotoxin gene superfamilies in the venomous snail, Conus victoriaeIdentification of candidate mimicry proteins involved in parasite-driven phenotypic changesDe novo transcriptome hybrid assembly and validation in the European earwig (Dermaptera, Forficula auricularia)afterParty: turning raw transcriptomes into permanent resourcesTranscriptome analysis of yellow horn (Xanthoceras sorbifolia Bunge): a potential oil-rich seed tree for biodiesel in ChinaTranscriptome characterisation of Pinus tabuliformis and evolution of genes in the Pinus phylogenyEvaluating de Bruijn graph assemblers on 454 transcriptomic dataA consensus approach to vertebrate de novo transcriptome assembly from RNA-seq data: assembly of the duck (Anas platyrhynchos) transcriptome.Evaluation of de novo transcriptome assemblies from RNA-Seq data.Pyrosequencing and de novo assembly of Antarctic krill (Euphausia superba) transcriptome to study the adaptability of krill to climate-induced environmental changesA pipeline for the de novo assembly of the Themira biloba (Sepsidae: Diptera) transcriptome using a multiple k-mer length approach.Genomic and transcriptomic analyses reveal distinct biological functions for cold shock proteins (VpaCspA and VpaCspD) in Vibrio parahaemolyticus CHN25 during low-temperature survival.Assessing De Novo transcriptome assembly metrics for consistency and utility.Exploring local immunological adaptation of two stickleback ecotypes by experimental infection and transcriptome-wide digital gene expression analysis.Combining next-generation sequencing and microarray technology into a transcriptomics approach for the non-model organism Chironomus riparius.Characterization of flower-bud transcriptome and development of genic SSR markers in Asian lotus (Nelumbo nucifera Gaertn.).De novo sequencing of Astyanax mexicanus surface fish and Pachón cavefish transcriptomes reveals enrichment of mutations in cavefish putative eye genes.VTBuilder: a tool for the assembly of multi isoform transcriptomes.De novo sequence assembly and characterization of Lycoris aurea transcriptome using GS FLX titanium platform of 454 pyrosequencing.The Antarctic krill Euphausia superba shows diurnal cycles of transcription under natural conditions.Functional metagenomic investigations of microbial communities in a shallow-sea hydrothermal system.Characterisation and analysis of the Aegilops sharonensis transcriptome, a wild relative of wheat in the Sitopsis section.Signatures of rapid evolution in urban and rural transcriptomes of white-footed mice (Peromyscus leucopus) in the New York metropolitan area.BSTA: a targeted approach combines bulked segregant analysis with next- generation sequencing and de novo transcriptome assembly for SNP discovery in sunflower.De novo transcriptome assembly for a non-model species, the blood-sucking bug Triatoma brasiliensis, a vector of Chagas disease.Molecular Diversity and Gene Evolution of the Venom Arsenal of Terebridae Predatory Marine Snails.Characterization of the cork oak transcriptome dynamics during acorn developmentPositive selection in development and growth rate regulation genes involved in species divergence of the genus Radix.rnaQUAST: a quality assessment tool for de novo transcriptome assemblies.Transcriptome sequencing and marker development in winged bean (Psophocarpus tetragonolobus; Leguminosae).Comparative transcriptomics enlarges the toolkit of known developmental genes in mollusks.Transcriptome analysis of Polygonum minus reveals candidate genes involved in important secondary metabolic pathways of phenylpropanoids and flavonoidsImproving transcriptome de novo assembly by using a reference genome of a related species: Translational genomics from oil palm to coconut.Pseudo-De Novo Assembly and Analysis of Unmapped Genome Sequence Reads in Wild Zebrafish Reveal Novel Gene ContentComplete Mitochondrial Genome of Helicoverpa zea (Lepidoptera: Noctuidae) and Expression Profiles of Mitochondrial-Encoded Genes in Early and Late EmbryosAnchored pseudo-de novo assembly of human genomes identifies extensive sequence variation from unmapped sequence reads.From deep sequencing to viral tagging: recent advances in viral metagenomics.Applications and challenges of next-generation sequencing in Brassica species.
P2860
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P2860
Evaluating characteristics of de novo assembly software on 454 transcriptome data: a simulation approach
description
2012 nî lūn-bûn
@nan
2012 թուականի Փետրուարին հրատարակուած գիտական յօդուած
@hyw
2012 թվականի փետրվարին հրատարակված գիտական հոդված
@hy
2012年の論文
@ja
2012年論文
@yue
2012年論文
@zh-hant
2012年論文
@zh-hk
2012年論文
@zh-mo
2012年論文
@zh-tw
2012年论文
@wuu
name
Evaluating characteristics of ...... me data: a simulation approach
@ast
Evaluating characteristics of ...... me data: a simulation approach
@en
Evaluating characteristics of ...... me data: a simulation approach
@nl
type
label
Evaluating characteristics of ...... me data: a simulation approach
@ast
Evaluating characteristics of ...... me data: a simulation approach
@en
Evaluating characteristics of ...... me data: a simulation approach
@nl
prefLabel
Evaluating characteristics of ...... me data: a simulation approach
@ast
Evaluating characteristics of ...... me data: a simulation approach
@en
Evaluating characteristics of ...... me data: a simulation approach
@nl
P2860
P50
P1433
P1476
Evaluating characteristics of ...... me data: a simulation approach
@en
P2093
Philine G D Feulner
P2860
P304
P356
10.1371/JOURNAL.PONE.0031410
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P577
2012-02-27T00:00:00Z