CHARMM-GUI Membrane Builder toward realistic biological membrane simulations. - Wikidata - wikimedia - TriplyDB

CHARMM-GUI Membrane Builder toward realistic biological membrane simulations.

CHARMM-GUI Membrane Builder toward realistic biological membrane simulations.

http://www.wikidata.org/entity/Q34195752

about

Molecular dynamics simulations of membrane proteins and their interactions: from nanoscale to mesoscale Molecular dynamics simulations of biological membranes and membrane proteins using enhanced conformational sampling algorithms Molecular Simulations of Gram-Negative Bacterial Membranes: A Vignette of Some Recent Successes GPCR-ModSim: A comprehensive web based solution for modeling G-protein coupled receptors Membrane Mediated Antimicrobial and Antitumor Activity of Cathelicidin 6: Structural Insights from Molecular Dynamics Simulation on Multi-Microsecond Scale Key diffusion mechanisms involved in regulating bidirectional water permeation across E. coli outer membrane lectin Helical unwinding and side-chain unlocking unravel the outward open conformation of the melibiose transporter.Computational studies of the binding profile of phosphoinositide PtdIns (3,4,5) P₃ with the pleckstrin homology domain of an oomycete cellulose synthase Jump into a New Fold-A Homology Based Model for the ABCG2/BCRP Multidrug Transporter BamA POTRA Domain Interacts with a Native Lipid Membrane Surface Energy transduction and alternating access of the mammalian ABC transporter P-glycoprotein.Refinement of OprH-LPS Interactions by Molecular Simulations.Simulations of cellulose translocation in the bacterial cellulose synthase suggest a regulatory mechanism for the dimeric structure of cellulose.Molecular dynamics simulation strategies for protein-micelle complexes.Targeted Genes Sequencing Identified a Novel 15 bp Deletion on GJA8 in a Chinese Family with Autosomal Dominant Congenital Cataracts.CHARMM-GUI MDFF/xMDFF Utilizer for Molecular Dynamics Flexible Fitting Simulations in Various Environments.Membrane-Induced Folding of the Plant Stress Dehydrin Lti30.Glycan Reader is Improved to Recognize Most Sugar Types and Chemical Modifications in the Protein Data Bank.Distinct domains of the β1-subunit cytosolic N terminus control surface expression and functional properties of large-conductance calcium-activated potassium (BK) channels Binding Site Recognition and Docking Dynamics of a Single Electron Transport Protein: Cytochrome c2 Structural insights into µ-opioid receptor activation.The Dynamic Process of Drug-GPCR Binding at Either Orthosteric or Allosteric Sites Evaluated by Metadynamics The Structure of a Sugar Transporter of the Glucose EIIC Superfamily Provides Insight into the Elevator Mechanism of Membrane Transport.Bilayer Properties of Lipid A from Various Gram-Negative Bacteria Structural biology. Structural basis for chemokine recognition and activation of a viral G protein-coupled receptor.Efficient Exploration of Membrane-Associated Phenomena at Atomic Resolution.Hexagonal Substructure and Hydrogen Bonding in Liquid-Ordered Phases Containing Palmitoyl Sphingomyelin.The Effect of a Novel c.820C>T (Arg274Trp) Mutation in the Mitofusin 2 Gene on Fibroblast Metabolism and Clinical Manifestation in a Patient.The DRF motif of CXCR6 as chemokine receptor adaptation to adhesion.Insight into Early-Stage Unfolding of GPI-Anchored Human Prion Protein.CHARMM-GUI HMMM Builder for Membrane Simulations with the Highly Mobile Membrane-Mimetic Model The Hydroxyl Side Chain of a Highly Conserved Serine Residue Is Required for Cation Selectivity and Substrate Transport in the Glial Glutamate Transporter GLT-1/SLC1A2.Mechanical properties of lipid bilayers from molecular dynamics simulation.Crucial role of the orexin-B C-terminus in the induction of OX1 receptor-mediated apoptosis: analysis by alanine scanning, molecular modelling and site-directed mutagenesis.CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field.Extension of a protein docking algorithm to membranes and applications to amyloid precursor protein dimerization.Dynamics and Interactions of OmpF and LPS: Influence on Pore Accessibility and Ion Permeability.Rigid proteins and softening of biological membranes-with application to HIV-induced cell membrane softening.A Microscopic Capacitor Model of Voltage Coupling in Membrane Proteins: Gating Charge Fluctuations in Ci-VSD Impact of membrane lipid composition on the structure and stability of the transmembrane domain of amyloid precursor protein.

P2860

Q26747182-F4AF1CD4-75E9-4EA8-83C2-5E1604F9EA72 Q26772040-1EA2F752-7524-43FB-880E-37B1E7E204E8 Q26798390-EF492CBD-C8ED-42D9-A670-4263F91CF7F3 Q27323329-9E1E3B26-CEA6-43BF-BB8C-19FA10789006 Q27335132-10772179-ACC5-4F09-900B-CBBDCDC95E4D Q27336481-495BA474-C6E9-447C-B197-3E65D4A2F7AD Q27346636-85243CD2-7B4F-4830-AE10-DD56CED736D2 Q27350315-08AFF289-DB48-4A31-8804-D7D0E6ECC2BE Q28552715-8EABB315-CE16-467D-AA80-B49F142F7BF5 Q30152768-C7333F5A-595B-4C09-B503-9053A4346113 Q30252970-5050AFE4-1F1E-400E-B5C5-ADCE61281B66 Q30274925-26500977-F1E3-4543-8AE0-B6A72A9F3CE1 Q30276867-1D693B37-3847-4C08-9425-5446792314F0 Q30382622-707F35A3-8FE5-4D29-84A4-B875747E40C0 Q30385860-416DDD17-E46F-4F87-ACBF-471B1F9B6D82 Q30396234-46059EBA-1B09-41DC-8A0F-7FF0F62538F1 Q31098944-B18C20D5-7AC1-4651-8BCC-478C5B76C5C2 Q33459363-1F69007C-B78D-46F0-B095-3DAC1BFAA074 Q33737705-3D461EB8-138C-4BCE-A3EB-CDCAAC869E4C Q33919904-95C87C56-78A9-4C59-8911-703ADE7D1AE4 Q34488374-40E7079B-D708-4080-8AF7-EF882EF976ED Q34489039-97431123-9BDA-4913-935A-D6C4DE378B4A Q34525892-5D5CA952-E344-45F9-8F41-454C32940A92 Q34543053-8BFBD9C5-DA5B-42EA-86C2-91FE7F19FE7B Q35652476-D76AF15E-8EF2-43C5-9225-20D4667466B2 Q35812347-EC2D774E-D33C-459A-AF13-952DC40060C3 Q36044496-667F7EA8-6FB1-4D39-A138-32C1E1EF302A Q36246291-32D9D966-41F5-4394-96EC-2046C85F6658 Q36299479-39EFA3CB-A7DE-445E-8DD8-8DF713C69857 Q36309749-0692E7F2-1E6B-4919-B79F-FCD48D4E39E2 Q36309757-D217D6C1-455E-409B-9272-B0CF6EF3EF8B Q36381942-16DADDB2-E64C-4DC8-A725-E26E885B74AD Q36385077-F32F3388-1670-4C67-A36E-1410BFC09CCE Q36394992-2ABFFBDF-C487-41CF-9DE9-41B52725735C Q36461179-A87F0336-15AB-4EC2-AB79-E33A642BD1EB Q36470096-CA378C28-60CC-4B0C-83EA-6D239DB44059 Q36644957-08742AA1-DEF9-44B9-8594-AA9493690993 Q36875468-7D563928-96F3-4D79-B1F3-C91ABA73786A Q37038465-92577866-7BB1-421D-A896-620A326BC041 Q37247599-7A05BFA0-4E5C-4F26-BE38-4E7B3A0E2937

P2860

CHARMM-GUI Membrane Builder toward realistic biological membrane simulations.

http://www.wikidata.org/entity/Q34195752

description

2014 nî lūn-bûn

@nan

2014 թուականի Օգոստոսին հրատարակուած գիտական յօդուած

@hyw

2014 թվականի օգոստոսին հրատարակված գիտական հոդված

@hy

2014年の論文

@ja

2014年論文

@yue

2014年論文

@zh-hant

2014年論文

@zh-hk

2014年論文

@zh-mo

2014年論文

@zh-tw

2014年论文

@wuu

name

CHARMM-GUI Membrane Builder toward realistic biological membrane simulations.

@ast

CHARMM-GUI Membrane Builder toward realistic biological membrane simulations.

@en

CHARMM-GUI Membrane Builder toward realistic biological membrane simulations.

@nl

type

label

CHARMM-GUI Membrane Builder toward realistic biological membrane simulations.

@ast

CHARMM-GUI Membrane Builder toward realistic biological membrane simulations.

@en

CHARMM-GUI Membrane Builder toward realistic biological membrane simulations.

@nl

prefLabel

CHARMM-GUI Membrane Builder toward realistic biological membrane simulations.

@ast

CHARMM-GUI Membrane Builder toward realistic biological membrane simulations.

@en

CHARMM-GUI Membrane Builder toward realistic biological membrane simulations.

@nl

P1433

Q34195752-C001E4C9-9491-4F7B-B8F2-F13A45EBDE05

P1476

Q34195752-19D35E7A-8136-4E98-9C62-73EEC44A8B71

P2093

Q34195752-013CB0BE-52DB-493B-B439-1DAE33F201D9

Q34195752-12C0595B-1D68-4409-8787-EB4DC730B50C

Q34195752-1A927C78-CA6C-47B2-843E-FD2038327D94

Q34195752-2D8BAE8A-53C4-438B-A09B-B08B81D77D2F

Q34195752-4DF25EA8-7F2E-46DA-8A92-0BBC707709BE

Q34195752-94429067-35C5-43EA-AE1E-C763EC1F3CCD

Q34195752-9F20A43F-0A2A-4B44-A8E8-D8160A58A610

Q34195752-B2F7C9DC-FF4C-45A4-AF8D-2BF6E4AC65BE

Q34195752-B71A419F-6783-4F64-A5BE-42BEC1610932

Q34195752-B962136C-4B04-4E40-93AB-63746FC742E7

P2860

Q34195752-022B6DE2-9F5C-458B-94F8-895FEC43F185

Q34195752-097C0D19-4897-4CA6-BD86-76BB83E0E783

Q34195752-0BB6065A-0437-486F-9034-563E4C39447D

Q34195752-0F73A9BD-773C-4AAE-AB85-5B9B8120B55D

Q34195752-141B7A30-FAEE-421D-84B1-1FC4D1E17ACA

Q34195752-162DF15A-FF24-49F6-9091-B4F1DB7CB30C

Q34195752-1E699E4C-2234-4FD2-A64A-094557AB7844

Q34195752-2183C0DC-3AF7-461F-A10E-433AAA7AC1B3

Q34195752-24178CF2-7B9D-474C-B166-1155203358CB

Q34195752-28139DD6-004D-45D8-A8C6-09B2D81D4A1F

P304

Q34195752-8B0725B2-0537-4B78-B8AB-015886E3D503

P31

Q34195752-9BFFD5F1-E14C-4F0F-B8A2-A0C0385AB086

P356

Q34195752-999A4D37-4813-4A8E-A278-F308A935BA8B

P433

Q34195752-E0012D22-AE0A-427E-BDE2-39339F420756

P478

Q34195752-A49F5C6F-668F-4621-921C-69862D911A8D

P50

Q34195752-454C0047-C8B9-46C8-A49A-C97F4E4EF216

P577

Q34195752-1F5EBCF5-F316-4741-A03A-30C1DC945109

P698

Q34195752-764502EE-3E3B-44CA-A6A2-7D7F7B49DEE7

P932

Q34195752-B1F5B6E2-6C80-4587-9347-A0CE6C2466C9

P356

P1433

Journal of Computational Chemistry

P1476

CHARMM-GUI Membrane Builder toward realistic biological membrane simulations.

@en

P2093

Eder M Dávila-Contreras

http://www.w3.org/2001/XMLSchema#string

Emilia L Wu

http://www.w3.org/2001/XMLSchema#string

Huan Rui

http://www.w3.org/2001/XMLSchema#string

Jeffery B Klauda

http://www.w3.org/2001/XMLSchema#string

Jumin Lee

http://www.w3.org/2001/XMLSchema#string

Kevin C Song

http://www.w3.org/2001/XMLSchema#string

Richard M Venable

http://www.w3.org/2001/XMLSchema#string

Sunhwan Jo

http://www.w3.org/2001/XMLSchema#string

Viviana Monje-Galvan

http://www.w3.org/2001/XMLSchema#string

Xi Cheng

http://www.w3.org/2001/XMLSchema#string

P2860

Canonical dynamics: Equilibrium phase-space distributions

The Protein Data Bank

CHARMM: the biomolecular simulation program

Structural details of an interaction between cardiolipin and an integral membrane protein

VMD: visual molecular dynamics

Scalable molecular dynamics with NAMD

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

Phosphoinositides in cell regulation and membrane dynamics

Metabolism and selected functions of sphingolipids in the yeast Saccharomyces cerevisiae.

Phosphatidylinositol signalling reactions

P304

1997-2004

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P356

10.1002/JCC.23702

http://www.w3.org/2001/XMLSchema#string

P433

27

http://www.w3.org/2001/XMLSchema#string

P478

35

http://www.w3.org/2001/XMLSchema#string

P50

P577

2014-08-07T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P698

25130509

http://www.w3.org/2001/XMLSchema#string

P932

4165794

http://www.w3.org/2001/XMLSchema#string