Current challenges in de novo plant genome sequencing and assembly.
about
Genome and transcriptome sequencing identifies breeding targets in the orphan crop tef (Eragrostis tef)Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing dataA Belated Green Revolution for Cannabis: Virtual Genetic Resources to Fast-Track Cultivar DevelopmentEmerging Genomic Tools for Legume Breeding: Current Status and Future ProspectsHomoeologs: What Are They and How Do We Infer Them?Next Generation Sequencing Technologies: The Doorway to the Unexplored Genomics of Non-Model PlantsCurrent and new approaches in GMO detection: challenges and solutionsA field guide to whole-genome sequencing, assembly and annotationAssemblathon 2: evaluating de novo methods of genome assembly in three vertebrate speciesGenotyping by sequencing approaches to characterise crop genomes: choosing the right tool for the right applicationHybrid error correction and de novo assembly of single-molecule sequencing readsDissection of the octoploid strawberry genome by deep sequencing of the genomes of Fragaria speciesNext Generation Sequencing and Transcriptome Analysis Predicts Biosynthetic Pathway of Sennosides from Senna (Cassia angustifolia Vahl.), a Non-Model Plant with Potent Laxative PropertiesThe complex jujube genome provides insights into fruit tree biologyTurning over a new leaf in plant genomicsEvaluation of genome sequencing quality in selected plant species using expressed sequence tagsAre differences in genomic data sets due to true biological variants or errors in genome assembly: an example from two chloroplast genomesConPADE: genome assembly ploidy estimation from next-generation sequencing dataImprovement of the banana "Musa acuminata" reference sequence using NGS data and semi-automated bioinformatics methods.Why assembling plant genome sequences is so challengingGene duplication, population genomics, and species-level differentiation within a tropical mountain shrubNext generation sequencing and de novo transcriptome analysis of Costus pictus D. Don, a non-model plant with potent anti-diabetic properties.De Novo transcriptome assembly (NGS) of Curcuma longa L. rhizome reveals novel transcripts related to anticancer and antimalarial terpenoids.Optical mapping in plant comparative genomicsIntegrative structural annotation of de novo RNA-Seq provides an accurate reference gene set of the enormous genome of the onion (Allium cepa L.).High-resolution genetic mapping of maize pan-genome sequence anchors.Homologues of potato chromosome 5 show variable collinearity in the euchromatin, but dramatic absence of sequence similarity in the pericentromeric heterochromatin.HGA: de novo genome assembly method for bacterial genomes using high coverage short sequencing reads.Metassembler: merging and optimizing de novo genome assemblies.Fast comparison of genomic and meta-genomic reads with alignment-free measures based on quality valuesRevealing crosstalk of plant and fungi in the symbiotic roots of sewage-cleaning Eichhornia crassipes using direct de novo metatranscriptomic analysis.The tomato genome: implications for plant breeding, genomics and evolutionGenome-wide association studies using single nucleotide polymorphism markers developed by re-sequencing of the genomes of cultivated tomato.From plant genomes to protein families: computational tools.Strategies for optimizing BioNano and Dovetail explored through a second reference quality assembly for the legume model, Medicago truncatula.KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies.Hybrid assembly with long and short reads improves discovery of gene family expansions.The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome.Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity.A New Resistance Gene against Potato Late Blight Originating from Solanum pinnatisectum Located on Potato Chromosome 7.
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P2860
Current challenges in de novo plant genome sequencing and assembly.
description
2012 nî lūn-bûn
@nan
2012 թուականի Յունուարին հրատարակուած գիտական յօդուած
@hyw
2012 թվականի հունվարին հրատարակված գիտական հոդված
@hy
2012年の論文
@ja
2012年論文
@yue
2012年論文
@zh-hant
2012年論文
@zh-hk
2012年論文
@zh-mo
2012年論文
@zh-tw
2012年论文
@wuu
name
Current challenges in de novo plant genome sequencing and assembly.
@ast
Current challenges in de novo plant genome sequencing and assembly.
@en
Current challenges in de novo plant genome sequencing and assembly.
@nl
type
label
Current challenges in de novo plant genome sequencing and assembly.
@ast
Current challenges in de novo plant genome sequencing and assembly.
@en
Current challenges in de novo plant genome sequencing and assembly.
@nl
prefLabel
Current challenges in de novo plant genome sequencing and assembly.
@ast
Current challenges in de novo plant genome sequencing and assembly.
@en
Current challenges in de novo plant genome sequencing and assembly.
@nl
P2860
P921
P356
P1433
P1476
Current challenges in de novo plant genome sequencing and assembly.
@en
P2093
Jan Witkowski
Michael C Schatz
P2860
P2888
P356
10.1186/GB4015
P577
2012-01-01T00:00:00Z