Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts. - Wikidata - wikimedia - TriplyDB

Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts.

Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts.

http://www.wikidata.org/entity/Q34275201

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Tandem RNA chimeras contribute to transcriptome diversity in human population and are associated with intronic genetic variants What does our genome encode?Identifying fusion transcripts using next generation sequencing Evolutionary Insights into RNA trans-Splicing in Vertebrates Hypothesis: Artifacts, Including Spurious Chimeric RNAs with a Short Homologous Sequence, Caused by Consecutive Reverse Transcriptions and Endogenous Random Primers Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations Getting personalized cancer genome analysis into the clinic: the challenges in bioinformatics Proteogenomics: concepts, applications and computational strategies Chimeric RNAs in cancer and normal physiology.Recurrent fusion RNA DUS4L-BCAP29 in non-cancer human tissues and cells.Fusion transcriptome profiling provides insights into alveolar rhabdomyosarcoma.Expression profile of ectopic olfactory receptors determined by deep sequencing.ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data.Mapping the RNA-Seq trash bin: unusual transcripts in prokaryotic transcriptome sequencing data.ChiTaRS 2.1--an improved database of the chimeric transcripts and RNA-seq data with novel sense-antisense chimeric RNA transcripts Discovering and understanding oncogenic gene fusions through data intensive computational approaches InFusion: Advancing Discovery of Fusion Genes and Chimeric Transcripts from Deep RNA-Sequencing Data.ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data.A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection.Recurrent read-through fusion transcripts in breast cancer.New methods as alternative or corrective measures for the pitfalls and artifacts of reverse transcription and polymerase chain reactions (RT-PCR) in cloning chimeric or antisense-accompanied RNA Assessing the hodgepodge of non-mapped reads in bacterial transcriptomes: real or artifactual RNA chimeras?Is an observed non-co-linear RNA product spliced in trans, in cis or just in vitro?Novel domain combinations in proteins encoded by chimeric transcripts Topology of mammalian developmental enhancers and their regulatory landscapes.The Vertebrate Genome Annotation browser 10 years on Disruption of NCOA2 by recurrent fusion with LACTB2 in colorectal cancer.Novel RNA variants in colorectal cancers.Intron retention and transcript chimerism conserved across mammals: Ly6g5b and Csnk2b-Ly6g5b as examples.State of art fusion-finder algorithms are suitable to detect transcription-induced chimeras in normal tissues?Oncofuse: a computational framework for the prediction of the oncogenic potential of gene fusions.Fungal gene expression levels do not display a common mode of distribution.JAFFA: High sensitivity transcriptome-focused fusion gene detection.Programmed Genome Rearrangements in the Ciliate Oxytricha.Fusion transcript loci share many genomic features with non-fusion loci.Partitioning heritability by functional annotation using genome-wide association summary statistics.Identification of Novel Fusion Genes in Testicular Germ Cell Tumors.NCLscan: accurate identification of non-co-linear transcripts (fusion, trans-splicing and circular RNA) with a good balance between sensitivity and precision Unscrambling the genomic chaos of osteosarcoma reveals extensive transcript fusion, recurrent rearrangements and frequent novel TP53 aberrations Transcriptome analysis revealed chimeric RNAs, single nucleotide polymorphisms and allele-specific expression in porcine prenatal skeletal muscle.

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P2860

Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts.

http://www.wikidata.org/entity/Q34275201

description

2012 nî lūn-bûn

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2012 թուականի Մայիսին հրատարակուած գիտական յօդուած

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2012 թվականի մայիսին հրատարակված գիտական հոդված

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2012年の論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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Chimeras taking shape: potenti ...... d by chimeric RNA transcripts.

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Chimeras taking shape: potenti ...... d by chimeric RNA transcripts.

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Chimeras taking shape: potenti ...... d by chimeric RNA transcripts.

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Chimeras taking shape: potenti ...... d by chimeric RNA transcripts.

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Chimeras taking shape: potenti ...... d by chimeric RNA transcripts.

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Chimeras taking shape: potenti ...... d by chimeric RNA transcripts.

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Genome Research

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Chimeras taking shape: potenti ...... d by chimeric RNA transcripts.

@en

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Alexandra Gabashvili

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Angela Del Pozo

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Jaime Prilusky

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Michael Tress

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Vincent Lacroix

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Yishai Levin

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P2860

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Apparent non-canonical trans-splicing is generated by reverse transcriptase in vitro

GENCODE: producing a reference annotation for ENCODE

EGASP: the human ENCODE Genome Annotation Assessment Project

Evidence for transcript networks composed of chimeric RNAs in human cells

Tandem chimerism as a means to increase protein complexity in the human genome

Mapping and quantifying mammalian transcriptomes by RNA-Seq

An endogenous hybrid mRNA encodes TWE-PRIL, a functional cell surface TWEAK-APRIL fusion protein

Transcription-mediated gene fusion in the human genome.

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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10.1101/GR.130062.111

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7

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22

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Alfonso Valencia

Roderic Guigó i Serra

Milana Frenkel-Morgenstern

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2012-05-15T00:00:00Z

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224966145

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22588898

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3396365

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