Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages - Wikidata - wikimedia - TriplyDB

Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages

Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages

http://www.wikidata.org/entity/Q34295341

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Analysis methods for studying the 3D architecture of the genome One, Two, Three: Polycomb Proteins Hit All Dimensions of Gene Regulation Uncovering transcription factor modules using one- and three-dimensional analyses CTCF: the protein, the binding partners, the binding sites and their chromatin loops Systematic identification of gene family regulators in mouse and human embryonic stem cells Understanding spatial organizations of chromosomes via statistical analysis of Hi-C data GATA2 haploinsufficiency caused by mutations in a conserved intronic element leads to MonoMAC syndrome LOcating non-unique matched tags (LONUT) to improve the detection of the enriched regions for ChIP-seq data Variable reproducibility in genome-scale public data: A case study using ENCODE ChIP sequencing resource.3CPET: finding co-factor complexes from ChIA-PET data using a hierarchical Dirichlet process Discovering hotspots in functional genomic data superposed on 3D chromatin configuration reconstructions.The Genome Conformation As an Integrator of Multi-Omic Data: The Example of Damage Spreading in Cancer Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction Statistical challenges in analyzing methylation and long-range chromosomal interaction data NF-E2 p45 is important for establishing normal function of platelets.The transcription factor GATA1 regulates NBEAL2 expression through a long-distance enhancer.Transcriptional regulation and spatial interactions of head-to-head genes The haploinsufficient tumor suppressor, CUX1, acts as an analog transcriptional regulator that controls target genes through distal enhancers that loop to target promoters.Understanding the regulatory and transcriptional complexity of the genome through structure.Regression analysis of combined gene expression regulation in acute myeloid leukemia Genome-wide analysis uncovers high frequency, strong differential chromosomal interactions and their associated epigenetic patterns in E2-mediated gene regulation.Estrogen induces global reorganization of chromatin structure in human breast cancer cells Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex.Genome-wide Association Study Identifies Loci for the Polled Phenotype in Yak.Identifying Causal Genes at the Multiple Sclerosis Associated Region 6q23 Using Capture Hi-C High-throughput identification of long-range regulatory elements and their target promoters in the human genome Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations.SMARCA4 regulates gene expression and higher-order chromatin structure in proliferating mammary epithelial cells.Single-cell epigenomic variability reveals functional cancer heterogeneity.Detection and replication of epistasis influencing transcription in humans.Communication of genome regulatory elements in a folded chromosome.Hematopoietic transcriptional mechanisms: from locus-specific to genome-wide vantage points.Computational schemes for the prediction and annotation of enhancers from epigenomic assays.GATA-dependent transcriptional and epigenetic control of cardiac lineage specification and differentiation.How computer science can help in understanding the 3D genome architecture.Exploring the mechanisms of genome-wide long-range interactions: interpreting chromosome organization.MotifHyades: Expectation Maximization for de novo DNA Motif Pair Discovery on Paired Sequences.Inferring a role for methylation of intergenic DNA in the regulation of genes aberrantly expressed in precursor B-cell acute lymphoblastic leukemia.Peak shape clustering reveals biological insights Genome-Wide Analysis of the Distinct Types of Chromatin Interactions in Arabidopsis thaliana.

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P2860

Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages

http://www.wikidata.org/entity/Q34295341

description

2012 nî lūn-bûn

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2012 թուականի Յունիսին հրատարակուած գիտական յօդուած

@hyw

2012 թվականի հունիսին հրատարակված գիտական հոդված

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2012年の論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年论文

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name

Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages

@ast

Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages

@en

Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages

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type

label

Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages

@ast

Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages

@en

Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages

@nl

prefLabel

Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages

@ast

Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages

@en

Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages

@nl

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Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages

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Emery H Bresnick

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Heather Witt

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Koichi Katsumura

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Qianben Wang

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Victor X Jin

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Xun Lan

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Zhenqing Ye

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P2860

Determination of enriched histone modifications in non-genic portions of the human genome

Insights from genomic profiling of transcription factors

CTCF: master weaver of the genome

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Histone H3K27ac separates active from poised enhancers and predicts developmental state

Fast and accurate short read alignment with Burrows-Wheeler transform

Master regulatory GATA transcription factors: mechanistic principles and emerging links to hematologic malignancies

High-resolution profiling of histone methylations in the human genome

The role of chromatin during transcription

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

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