The ABCs of molecular dynamics simulations on B-DNA, circa 2012.
about
Assessing the Current State of Amber Force Field Modifications for DNAConvergence and reproducibility in molecular dynamics simulations of the DNA duplex d(GCACGAACGAACGAACGC)Molecular modeling of nucleic acid structure: energy and samplingDevelopment of an informatics infrastructure for data exchange of biomolecular simulations: Architecture, data models and ontologyRecovery of the poisoned topoisomerase II for DNA religation: coordinated motion of the cleavage core revealed with the microsecond atomistic simulation.Physico-chemical fingerprinting of RNA genesA statistical thermodynamic model for investigating the stability of DNA sequences from oligonucleotides to genomes.Predicting conformational ensembles and genome-wide transcription factor binding sites from DNA sequences.Disparate HDV ribozyme crystal structures represent intermediates on a rugged free-energy landscape.On the absence of intrahelical DNA dynamics on the μs to ms timescale.Simple Elastic Network Models for Exhaustive Analysis of Long Double-Stranded DNA Dynamics with Sequence Geometry DependenceMolecular modeling of nucleic acid structure: energy and sampling.Atomistic-level portrayal of drug-DNA Interplay: a history of courtships and meetings revealed by molecular simulations.Dynamic hydrogen bonding and DNA flexibility in minor groove binders: molecular dynamics simulation of the polyamide f-ImPyIm bound to the Mlu1 (MCB) sequence 5'-ACGCGT-3' in 2:1 motif.Molecular modeling of nucleic Acid structure: electrostatics and solvation.Molecular dynamics simulation studies for DNA sequence recognition by reactive metabolites of anticancer compounds.Twenty-five years of nucleic acid simulationsOn the mechanical analogue of DNA.Atomistic Molecular Dynamics Simulations of DNA Minicircle Topoisomers: A Practical Guide to Setup, Performance, and Analysis.TRX-LOGOS - a graphical tool to demonstrate DNA information content dependent upon backbone dynamics in addition to base sequence.Wobble pairs of the HDV ribozyme play specific roles in stabilization of active site dynamics.All-atom crystal simulations of DNA and RNA duplexes.Computational DNA binding studies of (-)-epigallocatechin-3-gallate.Design and characterization of symmetric nucleic acids via molecular dynamics simulations.Mechanical evolution of DNA double-strand breaks in the nucleosome.Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylationToward a Universal Structural and Energetic Model for Prokaryotic Promoters
P2860
Q27301352-3D328503-6CD0-4D19-9519-1B844EE599CDQ27332083-1B215060-6D4A-4C70-AE6A-B5DAE311247AQ28386410-41846544-968A-457F-B054-FD2EC886368BQ28606604-C87B7332-B2CF-4F59-9646-877FCE3D44B6Q30661486-4EB59A40-4FC5-43ED-8DCB-68B04D58FA42Q33580410-291ECB27-34D4-4B6D-8105-7DCDA22D804AQ33736568-3123A9DE-602E-4D82-93C0-D304058FABD9Q33826057-010E5E2E-8143-4056-9B8F-929297327866Q33967967-69545A23-FA30-465D-BBCF-67714DB5C2F5Q34433149-F5FC41C7-B445-452F-8C94-635C12575A33Q35857012-32188D0E-3700-474E-9D00-2D620EEBC9FCQ38186666-50CFA1A2-A9AB-47DB-A8FC-2105DE6D63CFQ38237566-EBAEA54F-3ADC-4500-BF35-5344B2AC828FQ38300869-3ACFE68B-F242-4745-8B33-3F946A3BA781Q38336095-038EC20B-5D9C-4C60-AC43-B2B9DC4C92E1Q39032493-455091F4-BB26-45C3-A211-56693354AC2FQ39399632-DBD1AB9D-9854-4194-9A89-35CCFAD03A97Q40401142-B1D97280-13F3-455D-A9D6-8DF6F0808C78Q41601722-D2ACEDC5-F9BB-4465-8FCE-CB24CC187F63Q41875083-57E80F42-55E8-42C0-BFAF-A82F5E05B671Q41877122-E48941A4-562B-4C11-BECF-0C3750DCFE78Q41962161-4178BB30-172D-44B7-9AAE-C13E89B2B64EQ48145457-40379405-0286-4971-B3A6-E01FA8199378Q53674619-6BC94074-AB07-4F58-8084-1CABE09B0DFDQ55515902-2D570142-1F57-46C0-8871-AC0AD3F6AA70Q56984530-42900522-0065-46CA-80F7-9ABF16D31840Q57044337-12218B0B-A4D5-4CAE-A385-1130991AD490
P2860
The ABCs of molecular dynamics simulations on B-DNA, circa 2012.
description
2012 nî lūn-bûn
@nan
2012 թուականի Յուլիսին հրատարակուած գիտական յօդուած
@hyw
2012 թվականի հուլիսին հրատարակված գիտական հոդված
@hy
2012年の論文
@ja
2012年論文
@yue
2012年論文
@zh-hant
2012年論文
@zh-hk
2012年論文
@zh-mo
2012年論文
@zh-tw
2012年论文
@wuu
name
The ABCs of molecular dynamics simulations on B-DNA, circa 2012.
@ast
The ABCs of molecular dynamics simulations on B-DNA, circa 2012.
@en
The ABCs of molecular dynamics simulations on B-DNA, circa 2012.
@nl
type
label
The ABCs of molecular dynamics simulations on B-DNA, circa 2012.
@ast
The ABCs of molecular dynamics simulations on B-DNA, circa 2012.
@en
The ABCs of molecular dynamics simulations on B-DNA, circa 2012.
@nl
prefLabel
The ABCs of molecular dynamics simulations on B-DNA, circa 2012.
@ast
The ABCs of molecular dynamics simulations on B-DNA, circa 2012.
@en
The ABCs of molecular dynamics simulations on B-DNA, circa 2012.
@nl
P2860
P1476
The ABCs of molecular dynamics simulations on B-DNA, circa 2012.
@en
P2093
David L Beveridge
Mihaly Mezei
P2860
P2888
P304
P356
10.1007/S12038-012-9222-6
P577
2012-07-01T00:00:00Z
P6179
1012675816