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NG6: Integrated next generation sequencing storage and processing environment

NG6: Integrated next generation sequencing storage and processing environment

http://www.wikidata.org/entity/Q34408598

about

Personalized Oncology Suite: integrating next-generation sequencing data and whole-slide bioimages.The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown.STATegra EMS: an Experiment Management System for complex next-generation omics experiments.DNA methylation and transcription in a distal region upstream from the bovine AlphaS1 casein gene after once or twice daily milking.WGS Analysis and Interpretation in Clinical and Public Health Microbiology Laboratories: What Are the Requirements and How Do Existing Tools Compare?SMITH: a LIMS for handling next-generation sequencing workflows.De Novo sequencing and transcriptome analysis for Tetramorium bicarinatum: a comprehensive venom gland transcriptome analysis from an ant species.SeqBench: integrated solution for the management and analysis of exome sequencing data.jvenn: an interactive Venn diagram viewer Jflow: a workflow management system for web applications.Targeted genomic enrichment and sequencing of CyHV-3 from carp tissues confirms low nucleotide diversity and mixed genotype infections De novo transcriptome sequencing and analysis of freshwater snail (Radix balthica) to discover genes and pathways affected by exposure to oxazepam.The Characterization of Novel Tissue Microbiota Using an Optimized 16S Metagenomic Sequencing Pipeline.Aozan: an automated post-sequencing data-processing pipeline.An overview of gene expression dynamics during early ovarian folliculogenesis: specificity of follicular compartments and bi-directional dialog.Functional proteomic insights in B-cell chronic lymphocytic leukemia.Vector soup: high-throughput identification of Neotropical phlebotomine sand flies using metabarcoding.Complete Genome Sequence of Lactococcus lactis subsp. lactis A12, a Strain Isolated from Wheat Sourdough.Shotgun assembly of the complete mitochondrial genome of the neotropical cracker butterfly Hamadryas epinome.Draft Genome Sequence of Enterohemorrhagic Escherichia coli O157:H7 Strain MC2 Isolated from Cattle in France.Draft genome sequence and characterization of commensal Escherichia coli strain BG1 isolated from bovine gastro-intestinal tract.iDNA screening: Disease vectors as vertebrate samplers.High-throughput sequencing of kDNA amplicons for the analysis of Leishmania minicircles and identification of Neotropical species.PCR-free shotgun sequencing of the stone loach mitochondrial genome (Barbatula barbatula).I-ATAC: interactive pipeline for the management and pre-processing of ATAC-seq samples.Characterization of plasmids harboring blaCTX-M and blaCMY genes in E. coli from French broilers.Genomic repeats, misassembly and reannotation: a case study with long-read resequencing of Porphyromonas gingivalis reference strains.Genomics analysis of Aphanomyces spp. identifies a new class of oomycete effector associated with host adaptation.Parallels between experimental and natural evolution of legume symbionts.Genetic and transcriptomic analyses provide new insights on the early antiviral response to VHSV in resistant and susceptible rainbow trout.Evaluation of short mitochondrial metabarcodes for the identification of Amazonian mammals Exploring soil microbial 16S rRNA sequence data to increase carbon yield and nitrogen efficiency of a bioenergy crop Molecular and cellular characterization of apoptosis in flat oyster a key mechanisms at the heart of host-parasite interactions

P2860

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P2860

NG6: Integrated next generation sequencing storage and processing environment

http://www.wikidata.org/entity/Q34408598

description

2012 nî lūn-bûn

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2012 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

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2012 թվականի սեպտեմբերին հրատարակված գիտական հոդված

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2012年の論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年论文

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name

NG6: Integrated next generation sequencing storage and processing environment

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NG6: Integrated next generation sequencing storage and processing environment

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NG6: Integrated next generation sequencing storage and processing environment

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NG6: Integrated next generation sequencing storage and processing environment

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NG6: Integrated next generation sequencing storage and processing environment

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NG6: Integrated next generation sequencing storage and processing environment

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NG6: Integrated next generation sequencing storage and processing environment

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NG6: Integrated next generation sequencing storage and processing environment

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NG6: Integrated next generation sequencing storage and processing environment

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NG6: Integrated next generation sequencing storage and processing environment

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Christophe Klopp

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Céline Noirot

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Frédéric Escudié

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Gérald Salin

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Jérôme Mariette

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Nicolas Allias

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Sylvain Thomas

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P2860

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

Fast and accurate short read alignment with Burrows-Wheeler transform

TopHat: discovering splice junctions with RNA-Seq

Basic local alignment search tool

The Sequence Alignment/Map format and SAMtools

Fast and accurate long-read alignment with Burrows-Wheeler transform

Galaxy: a platform for interactive large-scale genome analysis.

SLIMS--a user-friendly sample operations and inventory management system for genotyping labs.

PIMS sequencing extension: a laboratory information management system for DNA sequencing facilities.

Ergatis: a web interface and scalable software system for bioinformatics workflows.

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scholarly article

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10.1186/1471-2164-13-462

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2012-09-09T00:00:00Z

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3444930

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