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HAMAP in 2013, new developments in the protein family classification and annotation system

HAMAP in 2013, new developments in the protein family classification and annotation system

http://www.wikidata.org/entity/Q34495199

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Genome and transcriptome sequencing identifies breeding targets in the orphan crop tef (Eragrostis tef)Islander: a database of precisely mapped genomic islands in tRNA and tmRNA genes The InterPro protein families database: the classification resource after 15 years InterProScan 5: genome-scale protein function classification Diversity in protein domain superfamilies The history of the CATH structural classification of protein domains Variations in metabolic pathways create challenges for automated metabolic reconstructions: Examples from the tetrahydrofolate synthesis pathway Activities at the Universal Protein Resource (UniProt)From sequence to enzyme mechanism using multi-label machine learning.Ensembl Genomes 2013: scaling up access to genome-wide data High-Performance Integrated Virtual Environment (HIVE) Tools and Applications for Big Data Analysis.HAMAP in 2015: updates to the protein family classification and annotation system Prediction of Metabolic Pathway Involvement in Prokaryotic UniProtKB Data by Association Rule Mining Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View.Aberrant coordination geometries discovered in the most abundant metalloproteins.Noumeavirus replication relies on a transient remote control of the host nucleus.Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.NECTAR: a database of codon-centric missense variant annotations.Expert curation in UniProtKB: a case study on dealing with conflicting and erroneous data.Analysis of expressed genes of the bacterium 'Candidatus phytoplasma Mali' highlights key features of virulence and metabolism Comparative transcriptome profiling approach to glean virulence and immunomodulation-related genes of Fasciola hepatica.DomSign: a top-down annotation pipeline to enlarge enzyme space in the protein universe.Encyclopedia of bacterial gene circuits whose presence or absence correlate with pathogenicity--a large-scale system analysis of decoded bacterial genomes Decay of Sexual Trait Genes in an Asexual Parasitoid Wasp.ECDomainMiner: discovering hidden associations between enzyme commission numbers and Pfam domains pfsearchV3: a code acceleration and heuristic to search PROSITE profiles Misannotation Awareness: A Tale of Two Gene-Groups.Rule Mining Techniques to Predict Prokaryotic Metabolic Pathways.A Primer on Infectious Disease Bacterial Genomics Interaction networks for identifying coupled molecular processes in microbial communities.Why do Sequence Signatures Predict Enzyme Mechanism? Homology versus Chemistry.Retrieval of Enterobacteriaceae drug targets using singular value decomposition.A fragmented alignment method detects a putative phosphorylation site and a putative BRC repeat in the Drosophila melanogaster BRCA2 protein.antibacTR: dynamic antibacterial-drug-target ranking integrating comparative genomics, structural analysis and experimental annotation.Complete genome sequence of the Radiation-Resistant bacterium Rubrobacter radiotolerans RSPS-4.Large-scale automated function prediction of protein sequences and an experimental case study validation on PTEN transcript variants.Drugging the undruggable: gabapentin, pregabalin and the calcium channel α2δ subunit.An introduction to systems toxicology Draft genome sequence of subsp. strain Fito_F321, an endophyte microorganism from with biocontrol potential

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P2860

HAMAP in 2013, new developments in the protein family classification and annotation system

http://www.wikidata.org/entity/Q34495199

description

2012 nî lūn-bûn

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2012 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

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2012 թվականի նոյեմբերին հրատարակված գիտական հոդված

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2012年の論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年论文

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HAMAP in 2013, new development ...... fication and annotation system

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Andrea H Auchincloss

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Béatrice A Cuche

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Delphine Baratin

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Guillaume Keller

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UniProt Consortium

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P2860

Annotation error in public databases: misannotation of molecular function in enzyme superfamilies

Databases of homologous gene families for comparative genomics

OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011

The Pfam protein families database

InterPro in 2011: new developments in the family and domain prediction database

Enzyme-specific profiles for genome annotation: PRIAM

PROSITE, a protein domain database for functional characterization and annotation

TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes

Basic local alignment search tool

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D584-9

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scholarly article

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10.1093/NAR/GKS1157

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Database issue

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41

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Nicole Redaschi

Ioannis Xenarios

Elisabeth Coudert

Edouard de Castro

Lydie Bougueleret

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2012-11-27T00:00:00Z

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233799044

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