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Bright field microscopy as an alternative to whole cell fluorescence in automated analysis of macrophage imagesIn silico microdissection of microarray data from heterogeneous cell populationsRobust detection of periodic time series measured from biological systems.Reconstruction and validation of RefRec: a global model for the yeast molecular interaction network.Single-cell kinetics of a repressilator when implemented in a single-copy plasmidCancer research in the era of next-generation sequencing and big data calls for intelligent modeling.Quantitative analysis of colony morphology in yeast.NanoMiner - integrative human transcriptomics data resource for nanoparticle researchComputational framework for simulating fluorescence microscope images with cell populations.CGH-Plotter: MATLAB toolbox for CGH-data analysis.Simulation of microarray data with realistic characteristics.Robust regression for periodicity detection in non-uniformly sampled time-course gene expression data.Against Dataism and for Data Sharing of Big Biomedical and Clinical Data with Research Parasites.Software for quantification of labeled bacteria from digital microscope images by automated image analysis.Finding large domains of similarly expressed genes. A novel method using the MDL principle and the recursive segmentation procedure.Quantification of in vitro cell invasion through image analysis.Simulating fluorescent microscope images of cell populations.RMBNToolbox: random models for biochemical networksExtraction of the number of peroxisomes in yeast cells by automated image analysis.Segmentation of folds in tissue section images.Stochastic differential equation model for cerebellar granule cell excitability.A joint finite mixture model for clustering genes from independent Gaussian and beta distributed dataDetermining noisy attractors of delayed stochastic gene regulatory networks from multiple data sources.Effects of transcriptional pausing on gene expression dynamics.Information propagation within the Genetic Network of Saccharomyces cerevisiae.Stochastic sequence-level model of coupled transcription and translation in prokaryotes.Cell-to-cell diversity in protein levels of a gene driven by a tetracycline inducible promoter.A beta-mixture model for dimensionality reduction, sample classification and analysis.In vivo kinetics of transcription initiation of the lar promoter in Escherichia coli. Evidence for a sequential mechanism with two rate-limiting steps.Gene expression dynamics in the macrophage exhibit criticality.Effects of rate-limiting steps in transcription initiation on genetic filter motifs.ZebIAT, an image analysis tool for registering zebrafish embryos and quantifying cancer metastasis.Multi-scale Gaussian representation and outline-learning based cell image segmentation.Cell segmentation by multi-resolution analysis and maximum likelihood estimation (MAMLE)Genomically amplified Akt3 activates DNA repair pathway and promotes glioma progression.Relationships between probabilistic Boolean networks and dynamic Bayesian networks as models of gene regulatory networks.The tumorigenic FGFR3-TACC3 gene fusion escapes miR-99a regulation in glioblastoma.Transcriptome and small RNA deep sequencing reveals deregulation of miRNA biogenesis in human glioma.Tuning cell differentiation patterns and single cell dynamics by regulating proteins' functionalities in a toggle switch.Inference of kinetic parameters of delayed stochastic models of gene expression using a markov chain approximation
P50
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P50
description
hulumtues
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researcher
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wetenschapper
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հետազոտող
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name
Olli Yli-Harja
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Olli Yli-Harja
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Olli Yli-Harja
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Olli Yli-Harja
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Olli Yli-Harja
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Olli Yli-Harja
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Olli Yli-Harja
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Olli Yli-Harja
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Olli Yli-Harja
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Olli Yli-Harja
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Olli Yli-Harja
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Olli Yli-Harja
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Olli Yli-Harja
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Olli Yli-Harja
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Olli Yli-Harja
@sl
P106
P1153
6604021737
P21
P2456
P31
P496
0000-0001-8581-4414