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Probing genomic diversity and evolution of Escherichia coli O157 by single nucleotide polymorphisms.

Probing genomic diversity and evolution of Escherichia coli O157 by single nucleotide polymorphisms.

http://www.wikidata.org/entity/Q34655405

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Advances in Molecular Serotyping and Subtyping of Escherichia coli Future perspectives, applications and challenges of genomic epidemiology studies for food-borne pathogens: A case study of Enterohemorrhagic Escherichia coli (EHEC) of the O157:H7 serotype Evolution of an agriculture-associated disease causing Campylobacter coli clade: evidence from national surveillance data in Scotland Genomic diversity and evolution of Mycobacterium ulcerans revealed by next-generation sequencing A timescale for evolution, population expansion, and spatial spread of an emerging clone of methicillin-resistant Staphylococcus aureus A recalibrated molecular clock and independent origins for the cholera pandemic clones Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer.Anvi'o: an advanced analysis and visualization platform for 'omics data.An evaluation of Comparative Genome Sequencing (CGS) by comparing two previously-sequenced bacterial genomes.Association of Escherichia coli O157:H7 tir polymorphisms with human infection.Phylogenetic analysis of Shiga toxin 1 and Shiga toxin 2 genes associated with disease outbreaks.Incidence and tracking of Escherichia coli O157:H7 in a major produce production region in California.Comparative genomic analysis of clinical strains of Campylobacter jejuni from South Africa.Complete genome sequence of Treponema pallidum ssp. pallidum strain SS14 determined with oligonucleotide arrays.Variation in virulence among clades of Escherichia coli O157:H7 associated with disease outbreaks The continuing evolution of a bacterial pathogen.Analysis of the genome of the Escherichia coli O157:H7 2006 spinach-associated outbreak isolate indicates candidate genes that may enhance virulence.Derivation of Escherichia coli O157:H7 from its O55:H7 precursor.Identification of genes and genomic islands correlated with high pathogenicity in Streptococcus suis using whole genome tiling microarrays.Highly discriminatory single-nucleotide polymorphism interrogation of Escherichia coli by use of allele-specific real-time PCR and eBURST analysis.Multiresistant Gram-negative bacteria: the role of high-risk clones in the dissemination of antibiotic resistance.Phenotypic diversity of Escherichia coli O157:H7 strains associated with the plasmid O157.Genome signatures of Escherichia coli O157:H7 isolates from the bovine host reservoir.A reference pan-genome approach to comparative bacterial genomics: identification of novel epidemiological markers in pathogenic Campylobacter.Genomic anatomy of Escherichia coli O157:H7 outbreaks.Canonical Single Nucleotide Polymorphisms (SNPs) for High-Resolution Subtyping of Shiga-Toxin Producing Escherichia coli (STEC) O157:H7 Identification of intermediate in evolutionary model of enterohemorrhagic Escherichia coli O157 Evolutionary, ecological and biotechnological perspectives on plasmids resident in the human gut mobile metagenome Phylogeny of Shiga toxin-producing Escherichia coli O157 isolated from cattle and clinically ill humans.Occurrence of Escherichia coli O157:H7 in cattle feces and contamination of carcass and various contact surfaces in abattoir and butcher shops of Hawassa, Ethiopia.Single-nucleotide-polymorphism typing and genetic relationships of Salmonella enterica serovar Typhi isolates.Mobile effector proteins on phage genomes.Genomic O island 122, locus for enterocyte effacement, and the evolution of virulent verocytotoxin-producing Escherichia coli.Recent developments and future prospects in subtyping of foodborne bacterial pathogens.Whole Genome Sequencing for Genomics-Guided Investigations of Escherichia coli O157:H7 Outbreaks.Pathogenesis gene families in the common minimal genome of Staphylococcus aureus are hypervariable.A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis Lineage and genogroup-defining single nucleotide polymorphisms of Escherichia coli O157:H7.Phylogenetic classification of Escherichia coli O157:H7 strains of human and bovine origin using a novel set of nucleotide polymorphisms rhs genes are potential markers for multilocus sequence typing of Escherichia coli O157:H7 strains.

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Probing genomic diversity and evolution of Escherichia coli O157 by single nucleotide polymorphisms.

http://www.wikidata.org/entity/Q34655405

description

2006 nî lūn-bûn

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2006 թուականի Ապրիլին հրատարակուած գիտական յօդուած

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2006年の論文

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2006年論文

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2006年論文

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2006年論文

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2006年論文

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2006年論文

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2006年论文

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name

Probing genomic diversity and ...... ngle nucleotide polymorphisms.

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Probing genomic diversity and ...... ngle nucleotide polymorphisms.

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Probing genomic diversity and ...... ngle nucleotide polymorphisms.

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Probing genomic diversity and ...... ngle nucleotide polymorphisms.

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Probing genomic diversity and ...... ngle nucleotide polymorphisms.

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Probing genomic diversity and ...... ngle nucleotide polymorphisms.

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Alifiya S Motiwala

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Bala Swaminathan

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David Alland

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Efrain M Ribot

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Weihong Qi

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P2860

Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.

Genome sequence of enterohaemorrhagic Escherichia coli O157:H7

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Genomewide pattern of synonymous nucleotide substitution in two complete genomes of Mycobacterium tuberculosis

Molecular archaeology of the Escherichia coli genome

Gene expression analysis using oligonucleotide arrays produced by maskless photolithography

Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms

Microarray-based resequencing of multiple Bacillus anthracis isolates

Multiplex SNP typing by bioluminometric assay coupled with terminator incorporation (BATI)

EMBOSS: the European Molecular Biology Open Software Suite

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10.1101/GR.4759706

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6

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Escherichia coli

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1473186

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