GLYCAM06: a generalizable biomolecular force field. Carbohydrates - Wikidata - wikimedia - TriplyDB

GLYCAM06: a generalizable biomolecular force field. Carbohydrates

GLYCAM06: a generalizable biomolecular force field. Carbohydrates

http://www.wikidata.org/entity/Q34686342

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Protein-carbohydrate interactions studied by NMR: from molecular recognition to drug design Structural insights into RbmA, a biofilm scaffolding protein of V. cholerae Structural and functional roles of glycosylation in fungal laccase from Lentinus sp Conformational dynamics of dry lamellar crystals of sugar based lipids: an atomistic simulation study Uncovering the Relationship between Sulphation Patterns and Conformation of Iduronic Acid in Heparan Sulphate Molecular dynamics simulations of forced unbending of integrin α(v)β₃ A 3D-structural model of unsulfated chondroitin from high-field NMR: 4-sulfation has little effect on backbone conformation Involvement of Water in Carbohydrate−Protein Binding: Concanavalin A Revisited Role of Water Molecules in Structure and Energetics of Pseudomonas aeruginosa Lectin I Interacting with Disaccharides The Active Site of Oligogalacturonate Lyase Provides Unique Insights into Cytoplasmic Oligogalacturonate -Elimination Structure and binding analysis of Polyporus squamosus lectin in complex with the Neu5Ac 2-6Gal 1-4GlcNAc human-type influenza receptor Crystal structure of the conserved domain of the DC lysosomal associated membrane protein: implications for the lysosomal glycocalyx Structure of a tetrameric galectin fromCinachyrellasp. (ball sponge)Structural analysis of a bacterial exo- -D-N-acetylglucosaminidase in complex with an unusual disaccharide found in class III mucin Computational Screening of the Human TF-Glycome Provides a Structural Definition for the Specificity of Anti-Tumor Antibody JAA-F11 Viral Escape from Neutralizing Antibodies in Early Subtype A HIV-1 Infection Drives an Increase in Autologous Neutralization Breadth Carbohydrate Recognition by an Architecturally Complex α-N-Acetylglucosaminidase from Clostridium perfringens Carbohydrate Recognition by RpfB from Mycobacterium tuberculosis Unveiled by Crystallographic and Molecular Dynamics Analyses Enzymatic Basis for N-Glycan Sialylation: STRUCTURE OF RAT 2,6-SIALYLTRANSFERASE (ST6GAL1) REVEALS CONSERVED AND UNIQUE FEATURES FOR GLYCAN SIALYLATION Immunoglobulin G1 Fc Domain Motions: Implications for Fc Engineering Structure of the O-glycosylated conopeptide CcTx from Conus consors venom Solution structure, dynamics and binding studies of a family 11 carbohydrate-binding module from Clostridium thermocellum (CtCBM11)Molecular simulations of carbohydrates and protein-carbohydrate interactions: motivation, issues and prospects Specificity of a UDP-GalNAc pyranose-furanose mutase: a potential therapeutic target for Campylobacter jejuni infections Divalent metal ion-based catalytic mechanism of the Nudix hydrolase Orf153 (YmfB) from Escherichia coli A β1-6/β1-3 galactosidase from Bifidobacterium animalis subsp. lactis Bl-04 gives insight into sub-specificities of β-galactoside catabolism within Bifidobacterium Genetically encoded fragment-based discovery of glycopeptide ligands for carbohydrate-binding proteins Complement Factor H and Simian Virus 40 bind the GM1 ganglioside in distinct conformations Trisaccharide containing α2,3-linked sialic acid is a receptor for mumps virus Structural and functional characterization of a ruminal β-glycosidase defines a novel subfamily of glycosyl hydrolase family 3 with permuted domain topology Crystal structure of β1→6-galactosidase from Bifidobacterium bifidum S17: trimeric architecture, molecular determinants of the enzymatic activity and its inhibition by α-galactose Investigation of Carbohydrate Recognition via Computer Simulation Molecular simulations of glycolipids: Towards mammalian cell membrane models Interaction between trehalose and MTHase from Sulfolobus solfataricus studied by theoretical computation and site-directed mutagenesis Membrane interaction of bound ligands contributes to the negative binding cooperativity of the EGF receptor Stepwise catalytic mechanism via short-lived intermediate inferred from combined QM/MM MERP and PES calculations on retaining glycosyltransferase ppGalNAcT2 Glycosylation Effects on FSH-FSHR Interaction Dynamics: A Case Study of Different FSH Glycoforms by Molecular Dynamics Simulations The use of glycoinformatics in glycochemistry Metabolism of vertebrate amino sugars with N-glycolyl groups: resistance of α2-8-linked N-glycolylneuraminic acid to enzymatic cleavage Conformational properties of methyl β-maltoside and methyl α- and β-cellobioside disaccharides

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P2860

GLYCAM06: a generalizable biomolecular force field. Carbohydrates

http://www.wikidata.org/entity/Q34686342

description

2008 nî lūn-bûn

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2008 թուականի Մարտին հրատարակուած գիտական յօդուած

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2008 թվականի մարտին հրատարակված գիտական հոդված

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2008年の論文

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2008年論文

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2008年論文

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2008年論文

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2008年論文

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GLYCAM06: a generalizable biomolecular force field. Carbohydrates

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GLYCAM06: a generalizable biomolecular force field. Carbohydrates

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GLYCAM06: a generalizable biomolecular force field. Carbohydrates

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GLYCAM06: a generalizable biomolecular force field. Carbohydrates

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GLYCAM06: a generalizable biomolecular force field. Carbohydrates

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GLYCAM06: a generalizable biomolecular force field. Carbohydrates

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GLYCAM06: a generalizable biomolecular force field. Carbohydrates

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Journal of Computational Chemistry

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GLYCAM06: a generalizable biomolecular force field. Carbohydrates

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P2093

Austin B Yongye

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B Lachele Foley

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Charlisa R Daniels

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Jorge González-Outeiriño

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Karl N Kirschner

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Robert J Woods

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Sarah M Tschampel

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P2860

Solvent interactions determine carbohydrate conformation

The anticoagulant activation of antithrombin by heparin

The xenograft antigen bound to Griffonia simplicifolia lectin 1-B(4). X-ray crystal structure of the complex and molecular dynamics characterization of the binding site.

Molecular recognition of oligosaccharide epitopes by a monoclonal Fab specific for Shigella flexneri Y lipopolysaccharide: X-ray structures and thermodynamics

All-atom empirical potential for molecular modeling and dynamics studies of proteins

The structure of chondroitin B lyase complexed with glycosaminoglycan oligosaccharides unravels a calcium-dependent catalytic machinery

Biological roles of oligosaccharides: all of the theories are correct

Understanding the bacterial polysaccharide antigenicity of Streptococcus agalactiae versus Streptococcus pneumoniae.

Conformation of a trimannoside bound to mannose-binding protein by nuclear magnetic resonance and molecular dynamics simulations.

Solution structure of a pentasaccharide representing the repeating unit of the O-antigen polysaccharide from Escherichia coli O142: NMR spectroscopy and molecular simulation studies.

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622-655

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10.1002/JCC.20820

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4

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29

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2008-03-01T00:00:00Z

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5991886

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17849372

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4423547

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