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PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes

PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes

http://www.wikidata.org/entity/Q34974290

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The variant rs1867277 in FOXE1 gene confers thyroid cancer susceptibility through the recruitment of USF1/USF2 transcription factors African signatures of recent positive selection in human FOXI1 SNPs associated with cerebrospinal fluid phospho-tau levels influence rate of decline in Alzheimer's disease CardioGxE, a catalog of gene-environment interactions for cardiometabolic traits GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease Genome-wide association study identifies variants at CLU and PICALM associated with Alzheimer's disease Candidate gene association studies: a comprehensive guide to useful in silico tools Computational and statistical approaches to analyzing variants identified by exome sequencing Association of NTRK3 and its interaction with NGF suggest an altered cross-regulation of the neurotrophin signaling pathway in eating disorders In silico analysis of single nucleotide polymorphism (SNPs) in human β-globin gene Next generation tools for the annotation of human SNPs GWAS of cerebrospinal fluid tau levels identifies risk variants for Alzheimer's disease.First- and second-shell metal binding residues in human proteins are disproportionately associated with disease-related SNPs.Path to facilitate the prediction of functional amino acid substitutions in red blood cell disorders--a computational approach SNPLogic: an interactive single nucleotide polymorphism selection, annotation, and prioritization system.Cytokine gene variations associated with subsyndromal depressive symptoms in patients with breast cancer Next station in microarray data analysis: GEPAS.Computational refinement of functional single nucleotide polymorphisms associated with ATM gene iHAP--integrated haplotype analysis pipeline for characterizing the haplotype structure of genes Genome-wide survey of allele-specific splicing in humans.Genetic polymorphisms are associated with serum levels of sex hormone binding globulin in postmenopausal women.Association between polymorphisms in RMI1, TOP3A, and BLM and risk of cancer, a case-control study.Association between common germline genetic variation in 94 candidate genes or regions and risks of invasive epithelial ovarian cancer Generation and analysis of a 29,745 unique Expressed Sequence Tags from the Pacific oyster (Crassostrea gigas) assembled into a publicly accessible database: the GigasDatabase.FunctSNP: an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases Variations in potassium channel genes are associated with breast pain in women prior to breast cancer surgery.Cytokine gene variations associated with trait and state anxiety in oncology patients and their family caregivers.dPORE-miRNA: polymorphic regulation of microRNA genes.Associations between cytokine genes and a symptom cluster of pain, fatigue, sleep disturbance, and depression in patients prior to breast cancer surgery Cytokine gene associations with self-report ratings of morning and evening fatigue in oncology patients and their family caregivers.Cytokine gene variation is associated with depressive symptom trajectories in oncology patients and family caregivers.A two-phase case-control study for colorectal cancer genetic susceptibility: candidate genes from chromosomal regions 9q22 and 3q22.Case-control study for colorectal cancer genetic susceptibility in EPICOLON: previously identified variants and mucins.ICOS gene polymorphisms are associated with sporadic breast cancer: a case-control study A polymorphism near IGF1 is associated with body composition and muscle function in women from the Health, Aging, and Body Composition Study.Mutation screening of multiple genes in Spanish patients with autosomal recessive retinitis pigmentosa by targeted resequencing Single nucleotide polymorphisms in the Wnt and BMP pathways and colorectal cancer risk in a Spanish cohort.Investigating the structural impacts of I64T and P311S mutations in APE1-DNA complex: a molecular dynamics approach.Pharmacogenetic association of hypertension candidate genes with fasting glucose in the GenHAT Study VARIANT: Command Line, Web service and Web interface for fast and accurate functional characterization of variants found by Next-Generation Sequencing

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PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes

http://www.wikidata.org/entity/Q34974290

description

2006 nî lūn-bûn

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2006 թուականի Յուլիսին հրատարակուած գիտական յօդուած

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2006 թվականի հուլիսին հրատարակված գիտական հոդված

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2006年の論文

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2006年論文

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2006年論文

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2006年論文

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2006年論文

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2006年論文

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2006年论文

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PupaSuite: finding functional ...... arge-scale genotyping purposes

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PupaSuite: finding functional ...... arge-scale genotyping purposes

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Nucleic Acids Research

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PupaSuite: finding functional ...... arge-scale genotyping purposes

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Frederic Rousseau

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Hernán Dopazo

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Leonardo Arbiza

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Lucía Conde

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A vision for the future of genomics research

Searching for genetic determinants in the new millennium

The FoldX web server: an online force field

Human-mouse alignments with BLASTZ

A haplotype map of the human genome

SNPeffect: a database mapping molecular phenotypic effects of human non-synonymous coding SNPs

PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes

Database resources of the National Center for Biotechnology Information

Codon-substitution models for heterogeneous selection pressure at amino acid sites

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scholarly article

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10.1093/NAR/GKL071

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Web Server issue

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34

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Joaquín Dopazo

Juan M. Vaquerizas

Joost Schymkowitz

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2006-07-01T00:00:00Z

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6940903

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16845085

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single-nucleotide polymorphism

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1538854

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