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BioC: a minimalist approach to interoperability for biomedical text processing

BioC: a minimalist approach to interoperability for biomedical text processing

http://www.wikidata.org/entity/Q34992074

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Text mining resources for the life sciences.PubMedPortable: A Framework for Supporting the Development of Text Mining Applications Argo: enabling the development of bespoke workflows and services for disease annotation BioCreative V CDR task corpus: a resource for chemical disease relation extraction Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications The CHEMDNER corpus of chemicals and drugs and its annotation principles Processing biological literature with customizable Web services supporting interoperable formats Benchmarking infrastructure for mutation text mining Collective instance-level gene normalization on the IGN corpus The BioGRID interaction database: 2017 update A corpus for plant-chemical relationships in the biomedical domain Chemical entity recognition in patents by combining dictionary-based and statistical approaches Mining chemical patents with an ensemble of open systems Overview of the interactive task in BioCreative V Community challenges in biomedical text mining over 10 years: success, failure and the future.iSimp in BioC standard format: enhancing the interoperability of a sentence simplification system Finding abbreviations in biomedical literature: three BioC-compatible modules and four BioC-formatted corpora.Natural language processing pipelines to annotate BioC collections with an application to the NCBI disease corpus.BioC implementations in Go, Perl, Python and Ruby BioC interoperability track overview A rule-based named-entity recognition method for knowledge extraction of evidence-based dietary recommendations Assisting manual literature curation for protein-protein interactions using BioQRator tmBioC: improving interoperability of text-mining tools with BioC.BC4GO: a full-text corpus for the BioCreative IV GO task.RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information Overview of the gene ontology task at BioCreative IV Unsupervised gene function extraction using semantic vectors.Mutation extraction tools can be combined for robust recognition of genetic variants in the literature Web services-based text-mining demonstrates broad impacts for interoperability and process simplification.OntoGene web services for biomedical text mining.tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles Supporting the annotation of chronic obstructive pulmonary disease (COPD) phenotypes with text mining workflows.A general concept for consistent documentation of computational analyses.TRRUST: a reference database of human transcriptional regulatory interactions.Optimizing graph-based patterns to extract biomedical events from the literature.Establishing a baseline for literature mining human genetic variants and their relationships to disease cohorts.BioC viewer: a web-based tool for displaying and merging annotations in BioC BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.v3NLP Framework: Tools to Build Applications for Extracting Concepts from Clinical Text Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges

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BioC: a minimalist approach to interoperability for biomedical text processing

http://www.wikidata.org/entity/Q34992074

description

2013 nî lūn-bûn

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2013 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

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2013 թվականի սեպտեմբերին հրատարակված գիտական հոդված

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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BioC: a minimalist approach to interoperability for biomedical text processing

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BioC: a minimalist approach to interoperability for biomedical text processing

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BioC: a minimalist approach to interoperability for biomedical text processing

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Cathy H Wu

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Donald C Comeau

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Kevin Bretonnel Cohen

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Martin Krallinger

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Rezarta Islamaj Doğan

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Thomas C Wiegers

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Zhiyong Lu

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P2860

Overview of BioCreAtIvE: critical assessment of information extraction for biology

BioLemmatizer: a lemmatization tool for morphological processing of biomedical text

U-Compare: share and compare text mining tools with UIMA

The comparative toxicogenomics database: a cross-species resource for building chemical-gene interaction networks

Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II

SR4GN: a species recognition software tool for gene normalization

An open annotation ontology for science on web 3.0

Investigating heterogeneous protein annotations toward cross-corpora utilization.

BANNER: an executable survey of advances in biomedical named entity recognition.

Comparative analysis of five protein-protein interaction corpora

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10.1093/DATABASE/BAT064

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2013

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Alfonso Valencia

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Paolo Ciccarese

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24048470

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interoperability

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3889917

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