Simulations of the alternating access mechanism of the sodium symporter Mhp1. - Wikidata - wikimedia - TriplyDB

Simulations of the alternating access mechanism of the sodium symporter Mhp1.

Simulations of the alternating access mechanism of the sodium symporter Mhp1.

http://www.wikidata.org/entity/Q35556383

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Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics Efficient Atomistic Simulation of Pathways and Calculation of Rate Constants for a Protein-Peptide Binding Process: Application to the MDM2 Protein and an Intrinsically Disordered p53 Peptide.Exploring the conformational transitions of biomolecular systems using a simple two-state anisotropic network model Molecular mechanism of ligand recognition by membrane transport protein, Mhp1 Conformational Changes in Two Inter-Helical Loops of Mhp1 Membrane Transporter.AWE-WQ: fast-forwarding molecular dynamics using the accelerated weighted ensemble.Origin, diversification and substrate specificity in the family of NCS1/FUR transporters.Allantoin transport protein, PucI, from Bacillus subtilis: evolutionary relationships, amplified expression, activity and specificity.The molecular mechanism of ion-dependent gating in secondary transporters.Structure-function relationship of a plant NCS1 member--homology modeling and mutagenesis identified residues critical for substrate specificity of PLUTO, a nucleobase transporter from Arabidopsis.Computational characterization of structural dynamics underlying function in active membrane transporters.Simulating Current-Voltage Relationships for a Narrow Ion Channel Using the Weighted Ensemble Method.WESTPA: an interoperable, highly scalable software package for weighted ensemble simulation and analysis Simulating rare events using a weighted ensemble-based string method.Coupled global and local changes direct substrate translocation by neurotransmitter-sodium symporter ortholog LeuT.Structural determinants of water permeation through the sodium-galactose transporter vSGLT.A comparative study of structures and structural transitions of secondary transporters with the LeuT fold.How does water pass through a sugar transporter?Path-sampling strategies for simulating rare events in biomolecular systems.Weighted Ensemble Simulation: Review of Methodology, Applications, and Software.Native states of fast-folding proteins are kinetic traps.WExplore: hierarchical exploration of high-dimensional spaces using the weighted ensemble algorithm.Topological Dissection of the Membrane Transport Protein Mhp1 Derived from Cysteine Accessibility and Mass Spectrometry.Simultaneous Computation of Dynamical and Equilibrium Information Using a Weighted Ensemble of Trajectories.Modeling, substrate docking, and mutational analysis identify residues essential for the function and specificity of a eukaryotic purine-cytosine NCS1 transporter.Simulating the Function of the MjNhaP1 Transporter.Substrate Specificity of the FurE Transporter Is Determined by Cytoplasmic Terminal Domain Interactions.Mechanism of Substrate Translocation in an Alternating Access Transporter.

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P2860

Simulations of the alternating access mechanism of the sodium symporter Mhp1.

http://www.wikidata.org/entity/Q35556383

description

2011 nî lūn-bûn

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2011年の論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年论文

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2011年论文

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2011年论文

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name

Simulations of the alternating access mechanism of the sodium symporter Mhp1.

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Simulations of the alternating access mechanism of the sodium symporter Mhp1.

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type

label

Simulations of the alternating access mechanism of the sodium symporter Mhp1.

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Simulations of the alternating access mechanism of the sodium symporter Mhp1.

@en

prefLabel

Simulations of the alternating access mechanism of the sodium symporter Mhp1.

@ast

Simulations of the alternating access mechanism of the sodium symporter Mhp1.

@en

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J.BPJ.2011.09.061

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Biophysical Journal

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Simulations of the alternating access mechanism of the sodium symporter Mhp1.

@en

P2093

Amy L Dale

http://www.w3.org/2001/XMLSchema#string

Daniel M Zuckerman

http://www.w3.org/2001/XMLSchema#string

Divesh Bhatt

http://www.w3.org/2001/XMLSchema#string

Joshua L Adelman

http://www.w3.org/2001/XMLSchema#string

Lillian T Chong

http://www.w3.org/2001/XMLSchema#string

Matthew C Zwier

http://www.w3.org/2001/XMLSchema#string

Michael Grabe

http://www.w3.org/2001/XMLSchema#string

P2860

Accelerating molecular dynamic simulation on graphics processing units

Modeling and dynamics of the inward-facing state of a Na+/Cl- dependent neurotransmitter transporter homologue

The Crystal Structure of a Sodium Galactose Transporter Reveals Mechanistic Insights into Na+/Sugar Symport

Structure and Molecular Mechanism of a Nucleobase-Cation-Symport-1 Family Transporter

Molecular basis of transport and regulation in the Na(+)/betaine symporter BetP

Molecular Basis of Alternating Access Membrane Transport by the Sodium-Hydantoin Transporter Mhp1

The mechanism of sodium and substrate release from the binding pocket of vSGLT

Rapid calculation of RMSDs using a quaternion-based characteristic polynomial

Crystal structure of a bacterial homologue of Na+/Cl--dependent neurotransmitter transporters

Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations.

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2399-2407

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22098738

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