A map of minor groove shape and electrostatic potential from hydroxyl radical cleavage patterns of DNA.
about
Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shapeDNA dynamics and single-molecule biologyMolecular Basis for Sequence-Dependent Induced DNA BendingControl of DNA minor groove width and Fis protein binding by the purine 2-amino groupMechanistic insights into metal ion activation and operator recognition by the ferric uptake regulator.Modeling the electrostatic potential of asymmetric lipopolysaccharide membranes: the MEMPOT algorithm implemented in DelPhi.High-throughput functional testing of ENCODE segmentation predictions.Massively parallel in vivo enhancer assay reveals that highly local features determine the cis-regulatory function of ChIP-seq peaks.Chemical probing of RNA with the hydroxyl radical at single-atom resolution.Prediction of nucleosome rotational positioning in yeast and human genomes based on sequence-dependent DNA anisotropy.The pattern of DNA cleavage intensity around indelsGBshape: a genome browser database for DNA shape annotations.DNA exit ramps are revealed in the binding landscapes obtained from simulations in helical coordinates.Functional interplay between the RK motif and linker segment dictates Oct4-DNA recognition.AHR promoter variant modulates its transcription and downstream effectors by allele-specific AHR-SP1 interaction functioning as a genetic marker for vitiligoCorrelation of Thermal Stability and Structural Distortion of DNA Interstrand Cross-Links Produced from Oxidized Abasic Sites with Their Selective Formation and Repair.Complex effects of nucleotide variants in a mammalian cis-regulatory element.Probing DNA shape and methylation state on a genomic scale with DNase I.Unusual DNA packaging characteristics in endoreduplicated Caenorhabditis elegans oocytes defined by in vivo accessibility to an endogenous nuclease activity.A Conserved Structural Signature of the Homeobox Coding DNA in HOX genes.iROS-gPseKNC: Predicting replication origin sites in DNA by incorporating dinucleotide position-specific propensity into general pseudo nucleotide composition.Design and synthesis of heterocyclic cations for specific DNA recognition: from AT-rich to mixed-base-pair DNA sequencesBinding to the DNA minor groove by heterocyclic dications: from AT-specific monomers to GC recognition with dimers.FeON-FeOFF: the Helicobacter pylori Fur regulator commutates iron-responsive transcription by discriminative readout of opposed DNA grooves.The unusual monomer recognition of guanine-containing mixed sequence DNA by a dithiophene heterocyclic diamidine.Extreme carbon dioxide sorption hysteresis in open-channel rigid metal-organic frameworks.Conformations of p53 response elements in solution deduced using site-directed spin labeling and Monte Carlo sampling.Enzymatic excision of uracil residues in nucleosomes depends on the local DNA structure and dynamics.Specific minor groove solvation is a crucial determinant of DNA binding site recognitionThe Thiophene "Sigma-Hole" as a Concept for Preorganized, Specific Recognition of G⋅C Base Pairs in the DNA Minor Groove.Mechanistic Studies on RNA Strand Scission from a C2'-Radical.DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale.Sequence-specific transitions of the torsion angle gamma change the polar-hydrophobic profile of the DNA grooves: implication for indirect protein-DNA recognition.Molecular basis of CENP-C association with the CENP-A nucleosome at yeast centromeres.Genome-wide prediction of minor-groove electrostatic potential enables biophysical modeling of protein-DNA binding.Miniaturized sequencing gel system for quick analysis of DNA by hydroxyl radical cleavage.Hydroxyl-radical footprinting combined with molecular modeling identifies unique features of DNA conformation and nucleosome positioning.Prediction of replication origins by calculating DNA structural properties.Experimental maps of DNA structure at nucleotide resolution distinguish intrinsic from protein-induced DNA deformations.Validation of a computational docking methodology to identify the non-covalent binding site of ligands to DNA.
P2860
Q24630737-02D688D3-32B3-4E30-AD99-F39668E2AC2CQ26999369-9CAB012A-6EC3-4150-AAD9-AD74BFDAD470Q27676020-6372A95C-4FCC-4B23-A08D-E69CD1AE5D78Q27678077-A0295893-67FA-4B5F-A9F5-F64E81271830Q30658057-E7EA3C9E-9494-400E-B252-32895144F684Q33754076-F5EE5700-48DB-4D70-BDFD-AB9EE6835EA8Q34350068-16A74CDC-6F81-437C-8E20-D3E00127EDAFQ34354921-CADC6E51-70FB-4CFA-8D3A-14FF29BA93DBQ34489734-E33C2F9C-CD6C-4622-9171-D64BB97FE50AQ34667406-58A68887-913B-4955-BD01-D8E8BF73C3FFQ35062343-689D61BF-9FE6-4F15-A21D-93F9852FC47FQ35254905-9AAFE0A2-865D-46FC-8ACD-9DE2BD7BD7C4Q35559885-D64FE76A-B242-45F2-A9F7-E666B1569E43Q35786126-C24014EE-DC54-427B-B011-67E2FBEDA9CCQ36060628-FB0E0AE3-B0E8-445E-ADB3-D8024F137148Q36216612-634C292E-A383-453D-B1E4-E75E6345B15DQ36436964-E88E02EE-3135-41F2-9477-9F3924E018A7Q36782127-861BF06C-7774-4FB6-A971-F7772EE63DBFQ37285613-1F6527E2-1EE2-42F1-A804-C58F3B6C63A9Q37339797-7A64AB46-04EE-4C1E-92D5-89925D5C4C73Q37376225-623404E0-A36C-4D7E-AB3B-40DF01BDD998Q37701067-2AE9503D-2C44-470B-9D1F-07B2D0A38A96Q38068802-F2B68C06-EC9A-4FEC-82CE-C14245E81BC4Q38256791-47D6A7F1-45B2-4CBA-A592-0DAAB97ACF3CQ38733887-CCE40692-5A17-44F5-8708-FD9DF255C0A2Q41592655-2D646F5E-30D7-4EBF-A091-142E2962C657Q41982394-056C762C-1359-4C32-B214-81405BA2455CQ42029581-E41819F7-CA63-4567-B86F-0E491DF16C51Q42180508-37502F80-24F4-4795-A410-7C6ECEC8DD2AQ42333779-9A56251A-8D0A-48D2-8E08-DF7FDAA7300CQ42386005-66F39117-AB29-4304-9D35-FBE53F7CC4E1Q43116314-07D5A6CB-DC80-420D-B5FA-0811C03FE6DAQ43688809-44363F38-1702-4065-9663-BDC44767DD3AQ45071102-17FD561E-792F-4655-BB40-E418DE22703DQ45944885-FF22CDAE-E0C0-4F30-85C2-718B632B64CCQ46633986-A211D9CB-17CF-4964-BFCA-00C15724561AQ47678867-8A96418D-ECA5-49FA-933D-DC11C092804AQ48050998-FC2615E1-4C8D-4D7A-839E-CDDA58AD521CQ49489466-B11E9833-4A75-46B6-AE65-1187973154B1Q51083951-C35A1CFB-AC57-4FB6-8146-E943103D966C
P2860
A map of minor groove shape and electrostatic potential from hydroxyl radical cleavage patterns of DNA.
description
2011 nî lūn-bûn
@nan
2011年の論文
@ja
2011年論文
@yue
2011年論文
@zh-hant
2011年論文
@zh-hk
2011年論文
@zh-mo
2011年論文
@zh-tw
2011年论文
@wuu
2011年论文
@zh
2011年论文
@zh-cn
name
A map of minor groove shape an ...... ical cleavage patterns of DNA.
@ast
A map of minor groove shape an ...... ical cleavage patterns of DNA.
@en
type
label
A map of minor groove shape an ...... ical cleavage patterns of DNA.
@ast
A map of minor groove shape an ...... ical cleavage patterns of DNA.
@en
prefLabel
A map of minor groove shape an ...... ical cleavage patterns of DNA.
@ast
A map of minor groove shape an ...... ical cleavage patterns of DNA.
@en
P2093
P2860
P356
P1433
P1476
A map of minor groove shape an ...... dical cleavage patterns of DNA
@en
P2093
Barry Honig
Eric P Bishop
Richard S Mann
Stephen C J Parker
P2860
P304
P356
10.1021/CB200155T
P577
2011-10-13T00:00:00Z