The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources - Wikidata - wikimedia - TriplyDB

The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources

The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources

http://www.wikidata.org/entity/Q35631122

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Genome-Wide Survey of Gut Fungi (Harpellales) Reveals the First Horizontally Transferred Ubiquitin Gene from a Mosquito Host Selection for reduced translation costs at the intronic 5' end in fungi Elucidation of primary metabolic pathways in Aspergillus species: orphaned research in characterizing orphan genes.Comparative genome sequencing reveals chemotype-specific gene clusters in the toxigenic black mold Stachybotrys The fumagillin gene cluster, an example of hundreds of genes under veA control in Aspergillus fumigatus The WOPR Domain Protein OsaA Orchestrates Development in Aspergillus nidulans Activities at the Universal Protein Resource (UniProt)The NIMA kinase is required to execute stage-specific mitotic functions after initiation of mitosis Mitotic regulation of fungal cell-to-cell connectivity through septal pores involves the NIMA kinase.The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations MycoCosm portal: gearing up for 1000 fungal genomes.Filamentous ascomycete genomes provide insights into Copia retrotransposon diversity in fungi.A genomic survey of proteases in Aspergilli.The Set1/COMPASS histone H3 methyltransferase helps regulate mitosis with the CDK1 and NIMA mitotic kinases in Aspergillus nidulans Comparison of transcriptome technologies in the pathogenic fungus Aspergillus fumigatus reveals novel insights into the genome and MpkA dependent gene expression.Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae.Whole-genome comparison of Aspergillus fumigatus strains serially isolated from patients with aspergillosis.Using Bayesian modelling to investigate factors governing antibiotic-induced Candida albicans colonization of the GI tract A systems biology approach for the identification of target genes for the improvement of itaconic acid production in Aspergillus species Recent advances in genome mining of secondary metabolite biosynthetic gene clusters and the development of heterologous expression systems in Aspergillus nidulans.Prevalence of transcription factors in ascomycete and basidiomycete fungi.Trehalose synthesis in Aspergillus niger: characterization of six homologous genes, all with conserved orthologs in related species.Genome-scale analysis of the high-efficient protein secretion system of Aspergillus oryzae A CRISPR-Cas9 System for Genetic Engineering of Filamentous Fungi.Gene expression during zombie ant biting behavior reflects the complexity underlying fungal parasitic behavioral manipulation Transcription Factor SomA Is Required for Adhesion, Development and Virulence of the Human Pathogen Aspergillus fumigatus.Systems biology of fungal infection.A novel transcription factor gene FHS1 is involved in the DNA damage response in Fusarium graminearum.Nucleotide sequence composition adjacent to intronic splice sites improves splicing efficiency via its effect on pre-mRNA local folding in fungi Application of a non-amplification-based technology to detect invasive fungal pathogens.Fungal KATs/KDACs: A New Highway to Better Antifungal Drugs?A Transcriptome Meta-Analysis Proposes Novel Biological Roles for the Antifungal Protein AnAFP in Aspergillus niger.Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.The function and evolution of the Aspergillus genome.FSRD: fungal stress response database.RNAseq reveals hydrophobins that are involved in the adaptation of Aspergillus nidulans to lignocellulose.Prototype of an intertwined secondary-metabolite supercluster Unraveling the molecular basis of temperature-dependent genetic regulation in Penicillium marneffei.Regulation of mitosis by the NIMA kinase involves TINA and its newly discovered partner, An-WDR8, at spindle pole bodies.Insights into dynamic mitotic chromatin organization through the NIMA kinase suppressor SonC, a chromatin-associated protein involved in the DNA damage response.

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The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources

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Nucleic Acids Research

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Clinton Howarth

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Farrell Wymore

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Gail Binkley

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Gustavo C Cerqueira

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Jonathan Binkley

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Jonathan Crabtree

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Marek S Skrzypek

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Martha B Arnaud

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Matt Simison

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Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae

Genome sequencing and analysis of Aspergillus oryzae

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

The RCSB Protein Data Bank: redesigned web site and web services

Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88

A novel surface protein of Trichomonas vaginalis is regulated independently by low iron and contact with vaginal epithelial cells.

InterProScan--an integration platform for the signature-recognition methods in InterPro

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10.1093/NAR/GKR875

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40

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Jennifer R Wortman

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