Using linkage maps to correct and scaffold de novo genome assemblies: methods, challenges, and computational tools.
about
The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species.Construction of Ultradense Linkage Maps with Lep-MAP2: Stickleback F2 Recombinant Crosses as an ExampleFinding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions.De novo SNP discovery and genetic linkage mapping in poplar using restriction site associated DNA and whole-genome sequencing technologies.Genome analysis and avirulence gene cloning using a high-density RADseq linkage map of the flax rust fungus, Melampsora lini.Salmonid Chromosome Evolution as Revealed by a Novel Method for Comparing RADseq Linkage Maps.The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguityConstruction of the High-Density Genetic Linkage Map and Chromosome Map of Large Yellow Croaker (Larimichthys crocea).Construction and Annotation of a High Density SNP Linkage Map of the Atlantic Salmon (Salmo salar) Genome.The genetic map of goldfish (Carassius auratus) provided insights to the divergent genome evolutions in the Cyprinidae family.Linkage Mapping and Comparative Genomics of Red Drum (Sciaenops ocellatus) Using Next-Generation Sequencing.Improvement of the Threespine Stickleback Genome Using a Hi-C-Based Proximity-Guided Assembly.Towards integration of population and comparative genomics in forest trees.SSR-enriched genetic linkage maps of bermudagrass (Cynodon dactylon × transvaalensis), and their comparison with allied plant genomes.A high-resolution reference genetic map positioning 8.8 K genes for the conifer white spruce: structural genomics implications and correspondence with physical distance.Cytonuclear Epistasis Controls the Density of Symbiont Wolbachia pipientis in Nongonadal Tissues of Mosquito Culex quinquefasciatus.A High-Density Linkage Map Reveals Sexual Dimorphism in Recombination Landscapes in Red Deer (Cervus elaphus).Effect of Co-segregating Markers on High-Density Genetic Maps and Prediction of Map Expansion Using Machine Learning Algorithms.A transcriptome-SNP-derived linkage map of Apios americana (potato bean) provides insights about genome re-organization and synteny conservation in the phaseoloid legumes.Multiple hybrid de novo genome assembly of finger millet, an orphan allotetraploid crop.BatchMap: A parallel implementation of the OneMap R package for fast computation of F1 linkage maps in outcrossing species.Construction of an ultra-high density consensus genetic map, and enhancement of the physical map from genome sequencing in Lupinus angustifolius.Genomic repeats, misassembly and reannotation: a case study with long-read resequencing of Porphyromonas gingivalis reference strains.Genetic mapping and comparative genomics to inform restoration enhancement and culture of southern flounder, Paralichthys lethostigma.Identification of recombination events in outbred species with next-generation sequencing data.Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes.Tools for Genetic Studies in Experimental Populations of Polyploids.A Dense Linkage Map of Lake Victoria Cichlids Improved the Pundamilia Genome Assembly and Revealed a Major QTL for Sex-Determination.What are we missing about marine invasions? Filling in the gaps with evolutionary genomicsGenetic parameters and quantitative trait loci analysis associated with body size and timing at metamorphosis into glass eels in captive-bred Japanese eels (Anguilla japonica)Genomic approaches for studying crop evolutionThe State of "" Research for Farmed Penaeids: Advances in Research and Impediments to Industry UtilizationHigh-Resolution Genetic Map and QTL Analysis of Growth-Related Traits of Cultivated Under Suboptimal Temperature and Humidity Conditions
P2860
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P2860
Using linkage maps to correct and scaffold de novo genome assemblies: methods, challenges, and computational tools.
description
2015 nî lūn-bûn
@nan
2015年の論文
@ja
2015年論文
@yue
2015年論文
@zh-hant
2015年論文
@zh-hk
2015年論文
@zh-mo
2015年論文
@zh-tw
2015年论文
@wuu
2015年论文
@zh
2015年论文
@zh-cn
name
Using linkage maps to correct ...... nges, and computational tools.
@ast
Using linkage maps to correct ...... nges, and computational tools.
@en
type
label
Using linkage maps to correct ...... nges, and computational tools.
@ast
Using linkage maps to correct ...... nges, and computational tools.
@en
prefLabel
Using linkage maps to correct ...... nges, and computational tools.
@ast
Using linkage maps to correct ...... nges, and computational tools.
@en
P2860
P356
P1476
Using linkage maps to correct ...... nges, and computational tools.
@en
P2093
Janna L Fierst
P2860
P356
10.3389/FGENE.2015.00220
P577
2015-06-19T00:00:00Z