Distinct contribution of electrostatics, initial conformational ensemble, and macromolecular stability in RNA folding.
about
DelPhi: a comprehensive suite for DelPhi software and associated resourcesEvolutionary evidence for alternative structure in RNA sequence co-variationMultiple conformations are a conserved and regulatory feature of the RB1 5' UTRSharing and archiving nucleic acid structure mapping dataVisualizing the formation of an RNA folding intermediate through a fast highly modular secondary structure switchEvaluation of the information content of RNA structure mapping data for secondary structure prediction.Rapid quantification and analysis of kinetic •OH radical footprinting data using SAFA.Multiple unfolding events during native folding of the Tetrahymena group I ribozymeAdvances in RNA structure analysis by chemical probing.Evaluating our ability to predict the structural disruption of RNA by SNPs.Roles of DEAD-box proteins in RNA and RNP Folding.Molecular crowding overcomes the destabilizing effects of mutations in a bacterial ribozyme.Mapping the kinetic barriers of a Large RNA molecule's folding landscape.RNA molecules with conserved catalytic cores but variable peripheries fold along unique energetically optimized pathways.The Azoarcus group I intron ribozyme misfolds and is accelerated for refolding by ATP-dependent RNA chaperone proteins.Comparison of structural, thermodynamic, kinetic and mass transport properties of Mg(2+) ion models commonly used in biomolecular simulations.GARN: Sampling RNA 3D Structure Space with Game Theory and Knowledge-Based Scoring StrategiesForce Field for Mg(2+), Mn(2+), Zn(2+), and Cd(2+) Ions That Have Balanced Interactions with Nucleic Acids.Understanding the role of three-dimensional topology in determining the folding intermediates of group I introns.High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis.Informatics challenges in structured RNA.Importance of diffuse metal ion binding to RNAUnwinding RNA's secrets: advances in the biology, physics, and modeling of complex RNAs.The long-range P3 helix of the Tetrahymena ribozyme is disrupted during folding between the native and misfolded conformationsEnergy barriers, pathways, and dynamics during folding of large, multidomain RNAs.Complementing global measures of RNA folding with local reports of backbone solvent accessibility by time resolved hydroxyl radical footprinting.Exhaustive Enumeration of Kinetic Model Topologies for the Analysis of Time-Resolved RNA Folding.A complex assembly landscape for the 30S ribosomal subunit.DelPhi Web Server: A comprehensive online suite for electrostatic calculations of biological macromolecules and their complexes.Taming free energy landscapes with RNA chaperones.Toward a molecular understanding of RNA remodeling by DEAD-box proteins.Insights into RNA structure and function from genome-wide studies.Exploring the electrostatic energy landscape for tetraloop-receptor docking.RNA folding: A clear path to RNA catalysis.Semiautomated and rapid quantification of nucleic acid footprinting and structure mapping experiments.RNA catalysis as a probe for chaperone activity of DEAD-box helicases.Statistical mechanical modeling of RNA folding: from free energy landscape to tertiary structural prediction.
P2860
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P2860
Distinct contribution of electrostatics, initial conformational ensemble, and macromolecular stability in RNA folding.
description
2007 nî lūn-bûn
@nan
2007年の論文
@ja
2007年論文
@yue
2007年論文
@zh-hant
2007年論文
@zh-hk
2007年論文
@zh-mo
2007年論文
@zh-tw
2007年论文
@wuu
2007年论文
@zh
2007年论文
@zh-cn
name
Distinct contribution of elect ...... ular stability in RNA folding.
@ast
Distinct contribution of elect ...... ular stability in RNA folding.
@en
type
label
Distinct contribution of elect ...... ular stability in RNA folding.
@ast
Distinct contribution of elect ...... ular stability in RNA folding.
@en
prefLabel
Distinct contribution of elect ...... ular stability in RNA folding.
@ast
Distinct contribution of elect ...... ular stability in RNA folding.
@en
P2093
P2860
P356
P1476
Distinct contribution of elect ...... ular stability in RNA folding.
@en
P2093
Inna Shcherbakova
Magdalena A Jonikas
Michael Brenowitz
P2860
P304
P356
10.1073/PNAS.0608765104
P407
P577
2007-04-16T00:00:00Z