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Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies.

Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies.

http://www.wikidata.org/entity/Q35832789

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Establishing an analytic pipeline for genome-wide DNA methylation Integrating genetics and epigenetics in breast cancer: biological insights, experimental, computational methods and therapeutic potential Base resolution methylome profiling: considerations in platform selection, data preprocessing and analysis Epigenetic epidemiology: promises for public health research Integrating Epigenomics into the Understanding of Biomedical Insight Mosaic epigenetic dysregulation of ectodermal cells in autism spectrum disorder Prenatal mercury concentration is associated with changes in DNA methylation at TCEANC2 in newborns Lead exposure induces changes in 5-hydroxymethylcytosine clusters in CpG islands in human embryonic stem cells and umbilical cord blood Practical impacts of genomic data "cleaning" on biological discovery using surrogate variable analysis The era of integrative genomics: more data or better methods?Identification of differentially methylated loci using wavelet-based functional mixed models.A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data.The meta-epigenomic structure of purified human stem cell populations is defined at cis-regulatory sequences Novel region discovery method for Infinium 450K DNA methylation data reveals changes associated with aging in muscle and neuronal pathways.Quantitative identification of differentially methylated loci based on relative entropy for matched case-control data.Improved reporting of DNA methylation data derived from studies of the human placenta.Differential expression analysis of RNA-seq data at single-base resolution Global DNA methylation patterns in Barrett's esophagus, dysplastic Barrett's, and esophageal adenocarcinoma are associated with BMI, gender, and tobacco use.Exaggerated CpH methylation in the autism-affected brain.Analysis pipelines and packages for Infinium HumanMethylation450 BeadChip (450k) data DaVIE: Database for the Visualization and Integration of Epigenetic data.Probe Lasso: a novel method to rope in differentially methylated regions with 450K DNA methylation data.Functional normalization of 450k methylation array data improves replication in large cancer studies.A meta-analysis on age-associated changes in blood DNA methylation: results from an original analysis pipeline for Infinium 450k data.A coherent approach for analysis of the Illumina HumanMethylation450 BeadChip improves data quality and performance in epigenome-wide association studies.Identification of functionally methylated regions based on discriminant analysis through integrating methylation and gene expression data.Removing unwanted variation in a differential methylation analysis of Illumina HumanMethylation450 array data.An evaluation of statistical methods for DNA methylation microarray data analysis.Estimating DNA methylation levels by joint modeling of multiple methylation profiles from microarray data seqlm: an MDL based method for identifying differentially methylated regions in high density methylation array data.Methods for identifying differentially methylated regions for sequence- and array-based data.A cross-package Bioconductor workflow for analysing methylation array data Genome-wide DNA methylation profiling identifies a folate-sensitive region of differential methylation upstream of ZFP57-imprinting regulator in humans.Transcriptomics and methylomics of CD4-positive T cells in arsenic-exposed women Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays DMRforPairs: identifying differentially methylated regions between unique samples using array based methylation profiles ANRIL Promoter DNA Methylation: A Perinatal Marker for Later Adiposity Accounting for cellular heterogeneity is critical in epigenome-wide association studies.Longitudinal, genome-scale analysis of DNA methylation in twins from birth to 18 months of age reveals rapid epigenetic change in early life and pair-specific effects of discordance.Distinct DNA methylation profiles in subtypes of orofacial cleft.

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P2860

Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies.

http://www.wikidata.org/entity/Q35832789

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2012 nî lūn-bûn

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2012年の論文

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Bump hunting to identify diffe ...... igenetic epidemiology studies.

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Bump hunting to identify diffe ...... igenetic epidemiology studies.

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Bump hunting to identify diffe ...... igenetic epidemiology studies.

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Bump hunting to identify diffe ...... igenetic epidemiology studies.

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International Journal of Epidemiology

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Bump hunting to identify diffe ...... igenetic epidemiology studies.

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P2093

Hwajin Lee

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M Daniele Fallin

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Peter Murakami

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Rafael A Irizarry

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P2860

Model-based analysis of ChIP-Seq (MACS)

Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals

DNA methylation profiling of human chromosomes 6, 20 and 22

Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts

Human DNA methylomes at base resolution show widespread epigenomic differences

The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

A common variant in the FTO gene is associated with body mass index and predisposes to childhood and adult obesity

DNA methylation and gene function

Comprehensive methylome map of lineage commitment from haematopoietic progenitors

Applications of DNA tiling arrays for whole-genome analysis

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200-209

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10.1093/IJE/DYR238

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1

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Jeffrey T. Leek

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