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Principles for the post-GWAS functional characterization of cancer risk loci

Principles for the post-GWAS functional characterization of cancer risk loci

http://www.wikidata.org/entity/Q35887461

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Caffeine interaction with glutamate receptor gene GRIN2A: Parkinson's disease in Swedish population Site specific mutation of the Zic2 locus by microinjection of TALEN mRNA in mouse CD1, C3H and C57BL/6J oocytes The rise of regulatory RNA Molecular pathological epidemiology of epigenetics: emerging integrative science to analyze environment, host, and disease HERC2 rs12913832 modulates human pigmentation by attenuating chromatin-loop formation between a long-range enhancer and the OCA2 promoter Quantitative Trait Loci Identify Functional Noncoding Variation in Cancer Genetics of coronary artery disease and myocardial infarction Making sense of GWAS: using epigenomics and genome engineering to understand the functional relevance of SNPs in non-coding regions of the human genome Network-Based Integration of GWAS and Gene Expression Identifies a HOX-Centric Network Associated with Serous Ovarian Cancer Risk Two-phase and family-based designs for next-generation sequencing studies Candidate gene association studies: a comprehensive guide to useful in silico tools Enhancer scanning to locate regulatory regions in genomic loci Integrating next-generation sequencing into clinical oncology: strategies, promises and pitfalls Transcriptional Dynamics at Brain Enhancers: from Functional Specialization to Neurodegeneration The Future is The Past: Methylation QTLs in Schizophrenia Capture Hi-C identifies a novel causal gene, IL20RA, in the pan-autoimmune genetic susceptibility region 6q23 Genome-Wide Meta-Analyses of Breast, Ovarian, and Prostate Cancer Association Studies Identify Multiple New Susceptibility Loci Shared by at Least Two Cancer Types Pleiotropy in complex traits: challenges and strategies Functional analysis of the 11q23.3 glioma susceptibility locus implicates PHLDB1 and DDX6 in glioma susceptibility 'Sifting the significance from the data' - the impact of high-throughput genomic technologies on human genetics and health care Stable gene targeting in human cells using single-strand oligonucleotides with modified bases Analysis of the transcriptome in molecular epidemiology studies Using GWAS to identify novel therapeutic targets for osteoporosis.Functional annotation of putative regulatory elements at cancer susceptibility Loci Gain-of-function lipoprotein lipase variant rs13702 modulates lipid traits through disruption of a microRNA-410 seed site A structural systems biology approach for quantifying the systemic consequences of missense mutations in proteins.Testing genetic association with rare and common variants in family data.Approaches to integrating germline and tumor genomic data in cancer research.Integration of transcriptomic and genomic data suggests candidate mechanisms for APOE4-mediated pathogenic action in Alzheimer's disease.Mergeomics: multidimensional data integration to identify pathogenic perturbations to biological systems.Prediction of potential cancer-risk regions based on transcriptome data: towards a comprehensive view Mapping eQTLs with RNA-seq reveals novel susceptibility genes, non-coding RNAs and alternative-splicing events in systemic lupus erythematosus Functional characterization of a multi-cancer risk locus on chr5p15.33 reveals regulation of TERT by ZNF148 Functional annotation signatures of disease susceptibility loci improve SNP association analysis.Allelic expression analysis of the osteoarthritis susceptibility locus that maps to chromosome 3p21 reveals cis-acting eQTLs at GNL3 and SPCS1 Shared common variants in prostate cancer and blood lipids.Integrative eQTL-based analyses reveal the biology of breast cancer risk loci Large-scale functional organization of long-range chromatin interaction networks RNA-Seq and human complex diseases: recent accomplishments and future perspectives.FunciSNP: an R/bioconductor tool integrating functional non-coding data sets with genetic association studies to identify candidate regulatory SNPs

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Principles for the post-GWAS functional characterization of cancer risk loci

http://www.wikidata.org/entity/Q35887461

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Principles for the post-GWAS functional characterization of cancer risk loci

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Principles for the post-GWAS functional characterization of cancer risk loci

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Principles for the post-GWAS functional characterization of cancer risk loci

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Principles for the post-GWAS functional characterization of cancer risk loci

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Principles for the post-GWAS functional characterization of cancer risk loci

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Principles for the post-GWAS functional characterization of cancer risk loci

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Nature Genetics

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Principles for the post-GWAS functional characterization of cancer risk loci

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Chris Carlson

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Christoph Plass

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David Duggan

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Gerhard A Coetzee

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Graham Casey

http://www.w3.org/2001/XMLSchema#string

Haris G Vikis

http://www.w3.org/2001/XMLSchema#string

Ian G Mills

http://www.w3.org/2001/XMLSchema#string

Jay W Tichelaar

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Mariella De Biasi

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Matthew L Freedman

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Genome-wide associations of gene expression variation in humans

ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context

Trait-associated SNPs are more likely to be eQTLs: annotation to enhance discovery from GWAS

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

Genomic views of distant-acting enhancers

Mutations in ABCA12 underlie the severe congenital skin disease harlequin ichthyosis.

Epigenetic regulation of the tumor suppressor gene TCF21 on 6q23-q24 in lung and head and neck cancer.

Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

From noncoding variant to phenotype via SORT1 at the 1p13 cholesterol locus

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513-518

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10.1038/NG.840

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6

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43

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Alvaro Monteiro

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2011-06-01T00:00:00Z

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51166690

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1040295779

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21614091

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genome-wide association study

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3325768

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