A widespread role of the motif environment in transcription factor binding across diverse protein families
about
Making sense of GWAS: using epigenomics and genome engineering to understand the functional relevance of SNPs in non-coding regions of the human genomeMassively parallel cis-regulatory analysis in the mammalian central nervous systemA Robust Analytical Pipeline for Genome-Wide Identification of the Genes Regulated by a Transcription Factor: Combinatorial Analysis Performed Using gSELEX-Seq and RNA-Seq.WSMD: weakly-supervised motif discovery in transcription factor ChIP-seq data.Predicting conformational ensembles and genome-wide transcription factor binding sites from DNA sequences.Short DNA sequence patterns accurately identify broadly active human enhancersThe orientation of transcription factor binding site motifs in gene promoter regions: does it matter?Bioinformatic prediction of transcription factor binding sites at promoter regions of genes for photoperiod and vernalization responses in model and temperate cereal plants.Pooled ChIP-Seq Links Variation in Transcription Factor Binding to Complex Disease Risk.Basset: learning the regulatory code of the accessible genome with deep convolutional neural networksHeterogeneity of transcription factor binding specificity models within and across cell lines.How motif environment influences transcription factor search dynamics: Finding a needle in a haystackSequences flanking the core-binding site modulate glucocorticoid receptor structure and activity.Systematic dissection of genomic features determining transcription factor binding and enhancer function.Proteins Recognizing DNA: Structural Uniqueness and Versatility of DNA-Binding Domains in Stem Cell Transcription Factors.DNA sequence+shape kernel enables alignment-free modeling of transcription factor binding.Mocap: large-scale inference of transcription factor binding sites from chromatin accessibilityTranscription factor-DNA binding: beyond binding site motifs.Computational challenges in modeling gene regulatory events.Conformational Dynamics and the Binding of Specific and Nonspecific DNA by the Autoinhibited Transcription Factor Ets-1DNA Shape Features Improve Transcription Factor Binding Site Predictions In Vivo.A machine learning approach for predicting CRISPR-Cas9 cleavage efficiencies and patterns underlying its mechanism of action.Single-molecule DNA unzipping reveals asymmetric modulation of a transcription factor by its binding site sequence and context.Mapping genome-wide transcription-factor binding sites using DAP-seq.Local sequence features that influence AP-1 cis-regulatory activity.Probing instructions for expression regulation in gene nucleotide compositions.Direct AUC optimization of regulatory motifs.SelexGLM differentiates androgen and glucocorticoid receptor DNA-binding preference over an extended binding site.Relationship between histone modifications and transcription factor binding is protein family specific.A unified approach for quantifying and interpreting DNA shape readout by transcription factors.Every transcription factor deserves its map: Scaling up epitope tagging of proteins to bypass antibody problems.Structural and functional dissection of differentially expressed tomato WRKY transcripts in host defense response against the vascular wilt pathogen (Fusarium oxysporum f. sp. lycopersici).
P2860
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P2860
A widespread role of the motif environment in transcription factor binding across diverse protein families
description
2015 nî lūn-bûn
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2015年の論文
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2015年論文
@yue
2015年論文
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2015年論文
@zh-hk
2015年論文
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2015年論文
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name
A widespread role of the motif ...... cross diverse protein families
@ast
A widespread role of the motif ...... cross diverse protein families
@en
type
label
A widespread role of the motif ...... cross diverse protein families
@ast
A widespread role of the motif ...... cross diverse protein families
@en
prefLabel
A widespread role of the motif ...... cross diverse protein families
@ast
A widespread role of the motif ...... cross diverse protein families
@en
P2093
P2860
P356
P1433
P1476
A widespread role of the motif ...... cross diverse protein families
@en
P2093
Carmit Levy
Tamar Golan
Yael Mandel-Gutfreund
P2860
P304
P356
10.1101/GR.184671.114
P577
2015-07-09T00:00:00Z