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Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model.

Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model.

http://www.wikidata.org/entity/Q36236100

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Phylogenomics and coalescent analyses resolve extant seed plant relationships Whole-genome analyses resolve early branches in the tree of life of modern birds Phylogenomic analyses of nuclear genes reveal the evolutionary relationships within the BEP clade and the evidence of positive selection in Poaceae Multilocus inference of species trees and DNA barcoding Reticulation, divergence, and the phylogeography-phylogenetics continuum Shotgun Mitogenomics Provides a Reference Phylogenetic Framework and Timescale for Living Xenarthrans Ten genes and two topologies: an exploration of higher relationships in skipper butterflies (Hesperiidae)Phylogenomic analyses of bat subordinal relationships based on transcriptome data The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference The value of molecular vs. morphometric and acoustic information for species identification using sympatric molossid bats Euarchontan Opsin Variation Brings New Focus to Primate Origins Ancient collagen reveals evolutionary history of the endemic South American 'ungulates'Multilocus species trees show the recent adaptive radiation of the mimetic heliconius butterflies Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs Multispecies coalescent analysis of the early diversification of neotropical primates: phylogenetic inference under strong gene trees/species tree conflict Primate phylogenetic relationships and divergence dates inferred from complete mitochondrial genomes A multilocus phylogeny reveals deep lineages within African galagids (Primates: Galagidae).Evolution and divergence of the mammalian SAMD9/SAMD9L gene family Heterogeneous models place the root of the placental mammal phylogeny Rewriting evolution--"been there, done that"Retrophylogenomics place tarsiers on the evolutionary branch of anthropoids Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families Reconstructing the Backbone of the Saccharomycotina Yeast Phylogeny Using Genome-Scale Data A Bayesian Supertree Model for Genome-Wide Species Tree Reconstruction Ancient proteins resolve the evolutionary history of Darwin’s South American ungulates Genomic data reveal ancient microendemism in forest scorpions across the California Floristic Province.De Novo Genome and Transcriptome Assembly of the Canadian Beaver (Castor canadensis)Estimating phylogenetic trees from genome-scale data.A composite genome approach to identify phylogenetically informative data from next-generation sequencing.Species Tree Estimation from Genome-Wide Data with guenomu.Simulation-Based Evaluation of Hybridization Network Reconstruction Methods in the Presence of Incomplete Lineage Sorting.Transcriptome sequencing and phylogenetic analysis of four species of luminescent beetles.Inferring Rates and Length-Distributions of Indels Using Approximate Bayesian Computation.Creating animal models, why not use the Chinese tree shrew (Tupaia belangeri chinensis)?L.U.St: a tool for approximated maximum likelihood supertree reconstruction ASTRAL: genome-scale coalescent-based species tree estimation.Coalescent-based genome analyses resolve the early branches of the euarchontoglires.Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals.An archaeal origin of eukaryotes supports only two primary domains of life.The inference of gene trees with species trees.

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P2860

Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model.

http://www.wikidata.org/entity/Q36236100

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2012 nî lūn-bûn

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Resolving conflict in eutheria ...... multispecies coalescent model.

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Resolving conflict in eutheria ...... multispecies coalescent model.

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Proceedings of the National Academy of Sciences of the United States of America

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Resolving conflict in eutheria ...... multispecies coalescent model.

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Liang Liu

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Sen Song

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Shaoyuan Wu

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P2860

Early history of mammals is elucidated with the ENCODE multiple species sequencing data

Resolving difficult phylogenetic questions: why more sequences are not enough

Retroposed elements as archives for the evolutionary history of placental mammals.

Insights into hominid evolution from the gorilla genome sequence

Confirming the phylogeny of mammals by use of large comparative sequence data sets

Using genomic data to unravel the root of the placental mammal phylogeny

MrBayes 3: Bayesian phylogenetic inference under mixed models

MRBAYES: Bayesian inference of phylogenetic trees

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

A new phylogenetic marker, apolipoprotein B, provides compelling evidence for eutherian relationships

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