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Comparative multi-omics systems analysis of Escherichia coli strains B and K-12

Comparative multi-omics systems analysis of Escherichia coli strains B and K-12

http://www.wikidata.org/entity/Q36245229

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Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation Rapid Evolution of Citrate Utilization by Escherichia coli by Direct Selection Requires citT and dctA Omics strategies for revealing Yersinia pestis virulence Safe Recombinant Outer Membrane Vesicles that Display M2e Elicit Heterologous Influenza Protection.Addition of Escherichia coli K-12 growth observation and gene essentiality data to the EcoCyc database Genomic and transcriptomic landscape of Escherichia coli BL21(DE3)A genome-scale metabolic flux model of Escherichia coli K-12 derived from the EcoCyc database.Biofuel production: an odyssey from metabolic engineering to fermentation scale-up.Enhanced whole genome sequence and annotation of Clostridium stercorarium DSM8532T using RNA-seq transcriptomics and high-throughput proteomics.Short-term differential adaptation to anaerobic stress via genomic mutations by Escherichia coli strains K-12 and B lacking alcohol dehydrogenase.EcoCyc: fusing model organism databases with systems biology.Recursive genomewide recombination and sequencing reveals a key refinement step in the evolution of a metabolic innovation in Escherichia coli.Fine-tuning citrate synthase flux potentiates and refines metabolic innovation in the Lenski evolution experiment.The EcoCyc Database.Proteome-wide subcellular topologies of E. coli polypeptides database (STEPdb).Bacteria-phage coevolution as a driver of ecological and evolutionary processes in microbial communities.A comparative analysis of industrial Escherichia coli K-12 and B strains in high-glucose batch cultivations on process-, transcriptome- and proteome level.Global insights into energetic and metabolic networks in Rhodobacter sphaeroides Identifying feasible metabolic routes in Mycobacterium smegmatis and possible alterations under diverse nutrient conditions.Detoxifying Escherichia coli for endotoxin-free production of recombinant proteins.Bacterial secretions of nonpathogenic Escherichia coli elicit inflammatory pathways: a closer investigation of interkingdom signaling.Revisiting Protocols for the NMR Analysis of Bacterial Metabolomes Calibration and analysis of genome-based models for microbial ecology Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments.Shedding metabo'light' on the search for sepsis biomarkers.Metabolic engineering of Escherichia coli to improve recombinant protein production.Virulence and transcriptome profile of multidrug-resistant Escherichia coli from chicken.The metabolic potential of Escherichia coli BL21 in defined and rich medium.Quick 96FASP for high throughput quantitative proteome analysis.Biological and chemical strategies for exploring inter- and intra-kingdom communication mediated via bacterial volatile signals.Rapid label-free quantitative analysis of the E. coli BL21(DE3) inner membrane proteome.Lycopene overproduction and in situ extraction in organic-aqueous culture systems using a metabolically engineered Escherichia coli.Incomplete LPS Core-Specific Felix01-Like Virus vB_EcoM_VpaE1.Effect of DNA sequence of Fab fragment on yield characteristics and cell growth of E. coli.Multi-omics Quantification of Species Variation of Escherichia coli Links Molecular Features with Strain Phenotypes.Acetate: friend or foe? Efficient production of a sweet protein in Escherichia coli BL21 using acetate as a carbon source.Global relationships in fluctuation and response in adaptive evolution.Application of stable isotope-assisted metabolomics for cell metabolism studies Combinatorial strategies for improving multiple-stress resistance in industrially relevant Escherichia coli strains.Optimization of expression of untagged and histidine-tagged human recombinant thrombin precursors in Escherichia coli.

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Comparative multi-omics systems analysis of Escherichia coli strains B and K-12

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Comparative multi-omics systems analysis of Escherichia coli strains B and K-12

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Comparative multi-omics systems analysis of Escherichia coli strains B and K-12

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Comparative multi-omics systems analysis of Escherichia coli strains B and K-12

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Comparative multi-omics systems analysis of Escherichia coli strains B and K-12

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Comparative multi-omics systems analysis of Escherichia coli strains B and K-12

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Comparative multi-omics systems analysis of Escherichia coli strains B and K-12

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Comparative multi-omics systems analysis of Escherichia coli strains B and K-12

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Choong Hoon Lee

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Dae-Hee Lee

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Haeyoung Jeong

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Ji Hoon Shim

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Jihyun F Kim

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Mee-Jung Han

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Sung Ho Yoon

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Tae Kwang Oh

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Xiao-Xia Xia

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P2860

Genome evolution and adaptation in a long-term experiment with Escherichia coli

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs)

Genomic comparisons among Escherichia coli strains B, K-12, and O157:H7 using IS elements as molecular markers.

A computational approach for identifying pathogenicity islands in prokaryotic genomes

The complete genome sequence of Escherichia coli K-12

Prokaryotic toxin-antitoxin stress response loci

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

Integrated genomic and proteomic analyses of a systematically perturbed metabolic network

Molecular basis of bacterial outer membrane permeability revisited

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